2016 Hinxton LEGO/Noctua Training Agenda

From GO Wiki
Jump to: navigation, search

Preparation

Everyone who has not registered for Noctua access previously, should register here: http://bit.ly/new-noctua-user

Sign up on the meeting logistics page

Agenda

Google doc for adding questions

  • Please add any questions you have to the Google doc so we can review and provide answers/input where needed. This will also help us with the training documentation.

Day 1 (Wednesday, 2016-08-31)

Morning

  • 9:00 - Introductions
  • 9:15 - Motivation for LEGO Modeling (Mungall/Thomas)
  • 9:45 - The Noctua Landing Page (Van Auken)
  • 10:00 – Making Conventional Annotations using Noctua (Hill) - http://noctua.berkeleybop.org/editor/graph/gomodel:57c4867e00000029
  • 10:30 – Coffee break
  • 11:00 - Introduction to the Annoton, Converting Conventional Annotations to Annotons (Hill)
  • 11:30 - Adding Contextual Information to Annotons (Hill)
  • 12:00 - Introduction to Relations Used in LEGO Annotation (Thomas)
  • 12:30 - Lunch

Afternoon

  • 13:30 - Handling Regulation (Hill)
  • 14:00 - Linking Annotons and Individuals Together, Combining Data from Multiple Papers, Using the Function Companion (Van Auken)
  • 14:30- Practice Annotating Papers
  • 15:00 – Coffee break
  • 15:30 – Practice Annotating Papers
  • 17:00- End Day 1

Note: there will be a breakout group for 2:30pm onwards: Chris, David OS, Seth, ...

Day 2 (Thursday, 2016-09-01)

Morning

  • 9:00 – Noctua Inputs and Outputs (GPI, NEO, GPAD, GAF, and OWL; RNAs, macromolecular omplexes, ...) (Mungall)
  • 10:00- Loading Noctua Annotations into MODS- the MGI example (Hill)
  • 10:30 – Coffee break
  • 11:00 – Practice Modeling
  • 12:30 - Lunch

Afternoon

  • 13:30- Models Discussion
  • 15:00 – Coffee break
  • 15:30- Models Discussion
  • 17:00- End Day 2

Day 3 (Friday, 2016-09-02)

Morning

  • 9:00am - 12:30pm Additional Modeling Practice and Discussion, as needed.