5 March 2019 PAINT Conference Call

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Present

Discussion points

Family Curation status

Huaiyu -> SQL query: 6,500 families done

Pipeline issues

  • There are still 4 open tickets in the PAINT pipeline project:

https://github.com/orgs/geneontology/projects/23 Status update on these?

  • Duplicate annotation problem is back:

https://github.com/geneontology/go-annotation/issues/2247 PTN000163972


Curation priorities

New families and fixing GitHub tickets (40 open as of Feb 27)

Tool feature requests

  • Undo
  • Links to AmiGO for all genes

Example tickets

Specificity of transporters

First issue: Questionable dispute

Second issue: questionable tree annotation

  • Review annotations to this family: PTHR43341
    • why did the curator NOT propagate 'amino acid transporter activity' ?
    • Weird propagation in a small pombe duplication node
    • No membrane annotation
    • Hardly any BP propagated
  • Could this be due to some automatic update ?