AHWG-20100202

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Present

Ben, Jane, Rama, Amelia, Mary, Seth

Time

~20m.

Agenda

  • chat in a little more detail about RG in AmiGO
  • answer Jane's question about species in TE
  • the changes that need to happen in AmiGO/loading etc for GAF 2.0
  • more RG branding?

Links

Discussion

  • col 16 name and gaf 2.0 loading
    • wait until we have Chris at Stanford
  • why are sources but not species available in AmiGO for most filtering?
    • gene_product_count table generation--data not there
  • why is iea filtering in TE one-sided?
    • gene_product_count table again--data not there
  • RG improvements
    • Jane suggests an RG tree/term view
  • Sven is working on helping us load the tree information into the db

Action Items

  • put up wiki page for Stanford visit (seth)
  • look into difficulty of changing gene_product_count loading (seth)

Previous and Ongoing Action Items

  • New RG views (with tree)
  • web converter for old-format obo files (part of general purpose converter).
  • action item (chris) to remind ev code group
  • release SOP wishlist (seth)
    • then ask ben
  • discuss SOP when we have more people
  • send notes along to software group
    • amigo data structs (amelia)
    • ref gen and DBIx::Class (seth)
  • put all new stuff in next release tracker (seth)
  • clean tracker more