AHWG-20100202

Present

Ben, Jane, Rama, Amelia, Mary, Seth

Time

~20m.

Agenda

• chat in a little more detail about RG in AmiGO
• answer Jane's question about species in TE
• the changes that need to happen in AmiGO/loading etc for GAF 2.0
• more RG branding?

Links

• http://amigo.berkeleybop.org/cgi-bin/amigo/amigo_exp?mode=ntree

Discussion

• col 16 name and gaf 2.0 loading
  • wait until we have Chris at Stanford
• why are sources but not species available in AmiGO for most filtering?
  • gene_product_count table generation--data not there
• why is iea filtering in TE one-sided?
  • gene_product_count table again--data not there
• RG improvements
  • Jane suggests an RG tree/term view
• Sven is working on helping us load the tree information into the db

Action Items

• put up wiki page for Stanford visit (seth)
• look into difficulty of changing gene_product_count loading (seth)

Previous and Ongoing Action Items

• New RG views (with tree)
• web converter for old-format obo files (part of general purpose converter).
• action item (chris) to remind ev code group
• release SOP wishlist (seth)
  • then ask ben

• discuss SOP when we have more people
• send notes along to software group
  • amigo data structs (amelia)
  • ref gen and DBIx::Class (seth)
• put all new stuff in next release tracker (seth)
• clean tracker more