AmiGO: Specifications

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Specifications for future releases of AmiGO. See the AmiGO: Mock-ups page for implementations of these specifications.

I like how we have mockups without specifications.

Here are some bare bones specifications:

AmiGO has two primary purposes:

1. Browsing the ontology

2. Displaying annotations (mappings) of Genes to GO terms

The current implementation has 3 different searching approaches to access this data:

  • search by term name
  • search by gene name/id
  • Blast vs annotated sequences (GOst)

GOst can also be used internally from a particular annotated sequence