AmiGO Manual: Linking To AmiGO
From GO Public
Contents |
[edit] Linking to General Pages in AmiGO
Search: http://amigo.geneontology.org/cgi-bin/amigo/search.cgi
BLAST: http://amigo.geneontology.org/cgi-bin/amigo/blast.cgi
Tree browser: http://amigo.geneontology.org/cgi-bin/amigo/browse.cgi
Term enrichment: http://amigo.geneontology.org/cgi-bin/amigo/term_enrichment
GO Slimmer: http://amigo.geneontology.org/cgi-bin/amigo/slimmer
[edit] Term Information
Links to term information pages use the full GO term IDs, including the GO: prefix. GO IDs are of the form
GO:nnnnnnn
where n are numbers.
[edit] Term Details
http://amigo.geneontology.org/cgi-bin/amigo/term-details.cgi?term=GO_TERM_ID
e.g. http://amigo.geneontology.org/cgi-bin/amigo/term-details.cgi?term=GO:0007200
[edit] Term Associations
http://amigo.geneontology.org/cgi-bin/amigo/term-assoc.cgi?term=GO_TERM_ID
e.g. http://amigo.geneontology.org/cgi-bin/amigo/term-assoc.cgi?term=GO:0007200
Optional parameters: term_assocs=[direct|all]
To view only direct associations to a term:
http://amigo.geneontology.org/cgi-bin/amigo/term-assoc.cgi?term=GO:0007200&term_assocs=direct
[edit] Term Bar Charts
http://amigo.geneontology.org/cgi-bin/amigo/term-chart.cgi?term=GO_TERM_ID
e.g. http://amigo.geneontology.org/cgi-bin/amigo/term-chart.cgi?term=GO:0007200
[edit] Gene Product Information
Gene product information can be accessed using the full ID of the gene product, composed of the database prefix and the local ID. For example, to access information about the UniProtKB protein O15178, use the gene product ID UniProtKB:O15178.
[edit] Gene Product Details
http://amigo.geneontology.org/cgi-bin/amigo/gp-details.cgi?gp=GENE_PRODUCT_ID
e.g. http://amigo.geneontology.org/cgi-bin/amigo/gp-details.cgi?gp=FB:FBgn0015946
[edit] Gene Product Associations
http://amigo.geneontology.org/cgi-bin/amigo/gp-assoc.cgi?gp=GENE_PRODUCT_ID
e.g. http://amigo.geneontology.org/cgi-bin/amigo/gp-assoc.cgi?gp=FB:FBgn0015946
