Annotation Advocacy Roadmap 2011

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Project January 2011 February 2011 March 2011 April 2011 May 2011 June 2011 July 2011 August 2011 September 2011 October 2011 November 2011 December 2011
Jamborees for Reference Genome Ongoing Preparation for GOC meeting Transcription Jamboree Col-16 discussion PAINT SOP (Paul)
Outreach to new groups Outreach to Chinese Hamster proteins group, NTNU for gastrin gps (Emily) Preparation for GOC meeting
Enforce annotation guidelines (absolute checks-annotations are wrong) Phase 1 checks in Production Encourage IEA methods to remove incorrect annotations from hard QCs (EBI-based workshop; Emily) Preparation for GOC meeting Extended IPI check for binding (GO:5488), IC and IPI with column checks
Soft QC checks (annotations that need to be reviewed but not removed) reciprocal annotations, checks on ND etc are documented on the RuleEngine page (Rama, Amelia), GO taxon contraints reviewed for manual annotations in the GOC, format of GO taxon constraints developed (Emily ++) Stable rules for GO taxon constraints made available Encourage IEA methods to remove incorrect annotations from soft QCs (EBI-based workshop; Emily) Preparation for GOC meeting soft QC checks for higher level Txn terms
Documentation of annotation guidelines Review top-level organisation of pages (Rama, Emily, Rachael, Harold?) and page display (Rama and Amelia) Support development of curation manual that is output from the Signalling workshop Review (Signaling working group; Becky, Sandra, Ruth) top-level organisation of pages (Rama, Emily, Rachael, Harold?) and page display (Rama and Amelia) Review top-level organisation of pages (Rama, Emily, Rachael, Harold?) and page display (Rama and Amelia) circulate drafts to GO list Preparation for GOC meeting Added Geneva guidelines to GOC website Transcription Annotation Manual (by Karen)
Documentation of evidence code guidelines Documentation for IAS, IMR, ILD from PAINT (Rama) Feedback to ECO Feedback to ECO Preparation for GOC meeting (table ECO<->GOC discussion?) Added PAINT evidence codes Updated IC evidence code, mapping of ECO to GO
GAF file format Documentation for Col. 16 cell type data (Rachael) Preparation for GOC meeting (table file format development discussion?)
Loading PAINT GAF files Call to remind groups to process these files. Preparation for GOC meeting Proposal to append PAINT annotations to all GAFs
Loading other GAF files Document Chris's script on annotation inferences (Emily) Encourage GOC groups to incorporate inferred annotation sets Encourage IEA methods to incorporate inferred annotation sets (EBI-based workshop; Emily) Preparation for GOC meeting Started documentation on MF-BP inferences
Educate curators on ontology development Signaling talk by Becky Foulger PAINT and inference annotation pipeline discussion, AmiGO and QuickGO review for curators discussion ECO discussion (reliant on state of ECO), GO taxon constraints being used to check annotation files discussion Metabolic pathway annotation discussion, Annotation QC checks being applied to GAF files discussion Preparation for GOC meeting Talk by Karen on Txn Talk by Midori on Col-16 Talk by Eleanor on Complete Proteome
AmiGO/QuickGO displays to support curation AmiGO: RefGen annotation display, QuickGO: GO term taxon constraints QuickGO: has_part display to be improved. QuickGO: ancestor chart display of terms to be removed. Preparation for GOC meeting