Annotation Conf. Call, September 11, 2012

From GO Wiki
Jump to: navigation, search

Agenda

  • Rule engine demo (Heiko): http://build.berkeleybop.org/view/GAF/
    • See also, http://wiki.geneontology.org/index.php/Jenkins#Jenkins_for_GAFs
    • Example report file with taxon contraint violations: dictyBase
      The report file lists errors first and than warnings. The (preliminary) format is a tab delimited line-based report.
    • Note: not all tests from the annotation_qc.xml have a Java implementation or regular expression (yet).
    • Currently there is only one GAF (GeneDB_Pfalciparum) which passes all tests. Please keep in mind, the test are currently running on the pre-filtered GAFs. This will change once SVN becomes the primary resource for GAF submissions (see next point in the agenda).