Annotation Conf. Call 2018-03-13

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Agenda

GOC Meeting, NYU, New York, NY, May 12-14th

  • Reminder to register, and reserve your hotel room before April 6th if staying at the Shelburne NYC
  • Logistics
  • Agenda

20th Anniversary GO Meeting, Montreal, CA

  • Dates set for Oct 17-20 (Wednesday - Friday, special dinner Thursday night)

HTP Annotation Guidelines

  • Helen has added documentation on the use of HTP evidence codes to the wiki:
    • Guide to GO Evidence Codes
    • Annotation standards for HTP proteomics experiments
      • How best to capture the combination of a published paper's experiment combined with secondary curator evaluation using some other methodology? New combinatorial evidence code and paper plus a GO reference? (This would be a change to our reference practice.)
    • Review RCA evidence code - Please can the groups listed below review their RCA annotations and decide if they'd still like to keep them and if RCA is still the appropriate evidence code?
      • TAIR
      • MGI
      • SGD
      • RGD
      • CAFA

UniProt vs UniProtKB

  • UniProt = contributed by
  • UniProtKB = annotated entities
  • This ticket is still open - are we just waiting for groups to have their software team implement and the changes to make their way to the GO website?
  • Is everyone also using UniProtKB as a prefix in the With/From field?

Annotation Review

Annotation Requests

GO-CAM/Noctua

  • Next call tomorrow, Wednesday, March 14th at 11:00am EDT (see Google calendar)

Protein Complexes Working Group

  • Next call this Thursday, March 15th at 10:30am EDT (see Google calendar)

Minutes

  • On call: Chris, David H., Dustin, Edith, Eric, George, Giulia, Harold, Helen, Karen, Kevin, Kimberly, Laurent-Phillipe, Li, Liz, Pascale, Petra, Rachael, Rob, Ruth, Sabrina, Sage, Shur-Jen, Stan, Suzi A, Suzi L, Tanya, Tom, Val

New Consoritum Members

  • Laurent-Phillipe - with Paul T.'s group but based in Berkeley
  • Dustin - also with Paul T's groups

NYU Meeting

  • Need to check with Peter D. about the Monday night group rate
  • Please add suggested topics to the Agenda wiki page
  • There will be an SAB meeting on Tuesday, the 15th
    • We are aiming to provide the SAB with information up front about the GO's activities
    • TBD who needs to present, stay on for the SAB meeting

20th Anniversary GO Meeting, Montreal, CA

  • Dates set for Oct 17-20 (Wednesday - Friday, special dinner Thursday night)
  • Any good ideas for GO 20th anniversary swag?

Infrastructure

  • PAINT annotations - now being directly injected into GO Central
    • Will be screened out when they come back in from the MOD
  • Consumption of derived GPAD files from GO-CAM models
    • How will this pipeline work ? MGI will be the test case for this pipeline.

Documentation

  • What information should be on the GOC website?
    • User-facing documentation (e.g. basic information about evidence codes)
    • More detailed documentation on the wiki

RCA

  • Should RCA annotations really be removed after one year?
  • If this evidence code really refers to analyses performed from a paper, is it reasonable to update?