Annotation Conf. Call 2021-03-02
Jump to navigation
Jump to search
Agenda and Minutes
GOC Meetings, Other Announcements
No GO Calls Week
- Next week - no GO calls week
Noctua Outages
- Noctua outage - Thursday, March 4th, 5pm PST (~1 hour)
- Update NEO and other ontologies
- If you're logged in, please save your work and log off by 5pm PST.
- April, weekends of 9th and 23rd
- Planned LBL outages
May Consortium Meeting
- Virtual Consortium Meeting -Tuesday May 4th - Friday May 7th (note shift forward by one day)
- Agenda/Minutes - please suggest topics for discussion and/or breakout groups
GAF 2.2
- The pipeline has now switched over to consuming and generating GAF2.2 files for snapshot releases
- Last version of snapshot ran on Sunday, February 28th
- GPAD 1.2 produced by GOC pipeline will use full set of gp2term relations as a way of moving us forward with GAF 2.2 more efficiently
- Implementing two new GO rules (59 and 61) wrt transitioning to GAF2.2
- Determine where each group is at wrt the GAF source file they provide to GO, any remaining issues to address
- As of 2021-02-28:
- dictyBase - GAF2.1? - submitted by UniProt GOA, so GAF2.2
- FlyBase - GAF2.2
- MGI - GAF2.2
- PAINT - GAF2.2
- PomBase - GAF2.1? converted to GAF2.2 2021-03-01
- Reactome - GAF2.1?
- RGD - GAF2.1?
- SGD - GAF2.0? converted to GAF2.2 coming today or tomorrow
- TAIR - GAF2.0?
- UniProt GOA - GAF2.2
- WB - GAF2.2
- Xenbase - still working on process for getting full GAF2.2 file for GOC; have stub GAF2.2 file with everything from GOA
- ZFIN - GAF2.1? converted to GAF2.2, will update
- As of 2021-02-28:
- Once rules 59 and 61 are implemented, do another round of testing, report any issues on github ticket
- For sample testing, see Google spreadsheet in Release checks
Ontology Editors Jamboree
- A few tickets of particular note for annotators:
- https://github.com/geneontology/go-ontology/issues/19082 NTR G protein activity
- https://github.com/geneontology/go-ontology/issues/20864 - possible merge or obsoletion of small G protein signal transduction (747 EXP)
Attendance
- On call: Colin, Daniel, David, Dustin, Edith, Gene, Giulia, Harold, Karen, Kimberly, Li, Malcolm, Mary, Midori, Pascale, Patrick, Penelope, Petra, Raymond, Robert, Sabrina, Seth, Sierra, Suzi, Rob, Stacia