Annotation Extension Relation Subsets

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These lists are intended for inclusion into curation tools to make it easier to choose a relation for a particular entity type.

Questions:

Should we have a separate subset for advanced relations, which includes relations such as regulates_o_results_in_movement_of, has_output_o_product_of, gene_product_of?


Cell/tissue/anatomy type

part_of

occurs_in

not_occurs_in

has_agent

acts_on_population_of

results_in_development_of

results_in_morphogenesis_of

results_in_maturation_of

results_in_commitment_to

results_in_movement_of

results_in_determination_of

results_in_specification_of

results_in_division_of

results_in_acquisition_of_features_of

results_in_formation_of


Developmental stages

part_of

during

happens_during

exists_during

not_during

not_happens_during

not_exists_during


Chemical

dependent_on

not_dependent_on

has_input

has_direct_input

has_indirect_input

has_output

in_absence_of

in_presence_of

inhibited_by

activated_by

localization_dependent_on

requires_substance


Protein, protein complex, gene or transcript identifier

dependent_on

not_dependent_on

has_input

has_direct_input

has_indirect_input

has_output

has_regulation_target

in_absence_of

in_presence_of

localization_dependent_on

requires_direct_regulator

requires_regulation_by

requires_regulator

stabilizes


Sequence feature

dependent_on

not_dependent_on

localization_dependent_on

requires_sequence_feature

requires_target_sequence_feature

occurs_at

not_occurs_at


GO:cellular component

part_of

requires_localization

localization_dependent_on

has_agent

occurs_at

not_occurs_at

occurs_in

not_occurs_in

results_in_development_of

results_in_maturation_of

results_in_morphogenesis_of


GO:molecular function

localization_dependent_on

dependent_on

not_dependent_on

during

happens_during

exists_during

not_during

not_happens_during

not_exists_during


GO:biological process

part_of

localization_dependent_on

dependent_on

not_dependent_on

during

happens_during

exists_during

not_during

not_happens_during

not_exists_during