Authoritative Database Groups

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Authoritative Database Groups Where two or more databases are submitting data on the same species the GO Consortium encourages the model whereby one database group collects all annotation data for that species, removes the redundant (duplicate) annotations, and then submits the total dataset to the central repository. This ensures that no redundant annotations will appear in the master dataset. The table below documents those species for which a single database group is responsible for collating and submitting annotations. The format of the IDs used by these database groups can be found in the list of GO database abbreviations. For converting between different ID types, please see the tools for ID mapping on the GO wiki. More information on authoritative database groups and avoiding redundancy can be found in the GO annotation policies and guidelines.

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GO Consortium groups responsible for all annotations for a species

Project name	Species
Candida Genome Database	Candida albicans, taxon:5476
dictyBase	Dictyostelium , taxon:5782 Dictyostelium discoideum, taxon:44689 Dictyostelium discoideum AX2, taxon:366501 Dictyostelium discoideum AX4, taxon:352472
FlyBase	Drosophila melanogaster, taxon:7227 (fruit fly)
Leishmania major GeneDB	Leishmania major, taxon:5664
Plasmodium falciparum GeneDB	Plasmodium falciparum, taxon:5833 (malaria parasite P. falciparum)
Pombase	Schizosaccharomyces pombe, taxon:4896 (fission yeast)
Trypanosoma brucei GeneDB	Trypanosoma brucei TREU927, taxon:185431
Glossina morsitans GeneDB	Glossina morsitans morsitans, taxon:37546
goa_chicken, UniProtKB-GOA	Gallus gallus, taxon:9031 (chicken) Gallus gallus bankiva, taxon:208525 Gallus gallus gallus, taxon:208526 Gallus gallus murghi, taxon:400035 Gallus gallus spadiceus, taxon:208524
goa_cow, UniProtKB-GOA	Bos taurus, taxon:9913 (cattle) Bos taurus X Bison bison, taxon:297284 (beefalo) Bos taurus x Bos indicus, taxon:30523
goa_human, UniProtKB-GOA	Homo sapiens, taxon:9606 (human)
gramene_oryza, Gramene	Oryza alta, taxon:52545 Oryza australiensis, taxon:4532 Oryza barthii, taxon:65489 Oryza brachyantha, taxon:4533 Oryza coarctata, taxon:77588 Oryza eichingeri, taxon:29689 Oryza glaberrima, taxon:4538 (African rice) Oryza glumipatula, taxon:40148 Oryza grandiglumis, taxon:29690 Oryza granulata, taxon:110450 Oryza latifolia, taxon:4534 Oryza longiglumis, taxon:83309 Oryza longistaminata, taxon:4528 Oryza malampuzhaensis, taxon:127571 Oryza meridionalis, taxon:40149 Oryza meyeriana, taxon:83307 Oryza minuta, taxon:63629 Oryza nivara, taxon:4536 Oryza officinalis, taxon:4535 Oryza punctata, taxon:4537 Oryza rhizomatis, taxon:65491 Oryza ridleyi, taxon:83308 Oryza rufipogon, taxon:4529 Oryza sativa, taxon:4530 (rice) Oryza sativa Indica Group, taxon:39946 Oryza sativa Japonica Group, taxon:39947 Oryza schlechteri, taxon:110451 Oryza sp. IRGC 105360, taxon:364100 Oryza sp. IRGC 81916, taxon:364099 Panicum , taxon:4539
Mouse Genome Informatics	Mus musculus, taxon:10090 (house mouse)
PAMGO_Atumefaciens	Agrobacterium tumefaciens str. C58, taxon:176299
Rat Genome Database	Rattus norvegicus, taxon:10116 (Norway rat)
Saccharomyces Genome Database	Saccharomyces cerevisiae, taxon:4932 (baker's yeast) Saccharomyces cerevisiae RM11-1a, taxon:285006 Saccharomyces cerevisiae YJM789, taxon:307796 Saccharomyces cerevisiae var. diastaticus, taxon:41870
The Arabidopsis Information Resource	Arabidopsis thaliana, taxon:3702 (thale cress)
tigr_Aphagocytophilum	Anaplasma phagocytophilum HZ, taxon:212042
tigr_Banthracis	Bacillus anthracis str. Ames, taxon:198094
tigr_Cburnetii	Coxiella burnetii RSA 493, taxon:227377
tigr_Chydrogenoformans	Carboxydothermus hydrogenoformans Z-2901, taxon:246194
tigr_Cjejuni	Campylobacter jejuni RM1221, taxon:195099
tigr_Cperfringens	Clostridium perfringens ATCC 13124, taxon:195103
tigr_Cpsychrerythraea	Colwellia psychrerythraea 34H, taxon:167879
tigr_Dethenogenes	Dehalococcoides ethenogenes 195, taxon:243164
tigr_Echaffeensis	Ehrlichia chaffeensis str. Arkansas, taxon:205920
tigr_Gsulfurreducens	Geobacter sulfurreducens PCA, taxon:243231
tigr_Hneptunium	Hyphomonas neptunium ATCC 15444, taxon:228405
tigr_Lmonocytogenes	Listeria monocytogenes str. 4b F2365, taxon:265669
tigr_Mcapsulatus	Methylococcus capsulatus str. Bath, taxon:243233
tigr_Nsennetsu	Neorickettsia sennetsu str. Miyayama, taxon:222891
tigr_Pfluorescens	Pseudomonas fluorescens Pf-5, taxon:220664
tigr_Psyringae	Pseudomonas syringae pv. tomato str. DC3000, taxon:223283
tigr_Psyringae_phaseolicola	Pseudomonas syringae pv. phaseolicola 1448A, taxon:264730
tigr_Soneidensis	Shewanella oneidensis MR-1, taxon:211586
tigr_Spomeroyi	Silicibacter pomeroyi DSS-3, taxon:246200
tigr_Tbrucei_chr2	Trypanosoma brucei, taxon:5691
tigr_Vcholerae	Vibrio cholerae O1 biovar El tor, taxon:686
WormBase database of nematode biology	Caenorhabditis elegans, taxon:6239
Zebrafish Information Network	Danio rerio, taxon:7955 (zebrafish)