Evidence Code Ontology (ECO)

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Suggestions for mapping between GO evidence codes and ECO ids.

GO evidence code GO_REF GO_REF name ECO code ECO Name Comment
IEA ECO:0000203 automatic assertion
IEA GO_REF:0000040 Gene Ontology annotation based on the automatic assignment of UniProtKB Subcellular Location terms in UniProtKB/TrEMBL entries. ECO:0000323 imported automatically asserted information used in automatic assertion
IEA GO_REF:0000038 Gene Ontology annotation based on automatic assignment of UniProtKB keywords in UniProtKB/TrEMBL entries. ECO:0000323 imported automatically asserted information used in automatic assertion
IEA GO_REF:0000039 Gene Ontology annotation based on the manual assignment of UniProtKB Subcellular Location terms in UniProtKB/Swiss-Prot entries. ECO:0000322 imported manually asserted information used in automatic assertion
IEA GO_REF:0000037 Gene Ontology annotation based on manual assignment of UniProtKB keywords in UniProtKB/Swiss-Prot entries. ECO:0000322 imported manually asserted information used in automatic assertion
IEA GO_REF:0000049 Automatic transfer of experimentally verified manual GO annotation data to fungal orthologs using Ensembl Compara. ECO:0000265 sequence orthology evidence used in automatic assertion
IEA GO_REF:0000002 Gene Ontology annotation through association of InterPro records with GO terms. ECO:0000256 match to a sequence model used in automatic assertion (inline with A.Bridge suggestion, see SF:3401500)
IEA GO_REF:0000020 Electronic Gene Ontology annotations created by transferring manual GO annotations between orthologous microbial proteins ECO:0000265 sequence orthology evidence used in automatic assertion
IEA GO_REF:0000004 Gene Ontology annotation based on Swiss-Prot keyword mapping. ECO:0000203 automatic assertion !!! Need more granular child
IEA GO_REF:0000023 Gene Ontology annotation based on Swiss-Prot Subcellular Location vocabulary mapping. ECO:0000203 automatic assertion !!! Need more granular child
IEA GO_REF:0000019 Automatic transfer of experimentally verified manual GO annotation data to orthologs using Ensembl Compara ECO:0000265 sequence orthology evidence used in automatic assertion
IEA GO_REF:0000035 Automatic transfer of experimentally verified manual GO annotation data to plant orthologs using Ensembl Compara ECO:0000265 sequence orthology evidence used in automatic assertion
IEA GO_REF:0000003 Gene Ontology annotation based on Enzyme Commission mapping. ECO:0000203 automatic assertion !!! Need more granular child
ND ECO:0000307 no biological data found used in manual assertion
EXP ECO:0000269 experimental evidence used in manual assertion
IDA ECO:0000314 direct assay result used in manual assertion
IMP ECO:0000315 mutant phenotype used in manual assertion
IGI ECO:0000316 genetic interaction experiment used in manual assertion
IEP ECO:0000270 expression evidence used in manual assertion
IPI ECO:0000021 physical interaction !!! Need a manual child - has been requested - see SF:3409858
TAS ECO:0000304 traceable author statement used in manual assertion
NAS ECO:0000303 non-traceable author statement used in manual assertion
IC ECO:0000305 curator inference used in manual assertion
ISS GO_REF:0000027 BLAST search criteria for ISS assignment in PAMGO_GAT ECO:0000031 protein BLAST evidence used in manual assertion
ISS GO_REF:0000011 Hidden Markov Models (TIGR) ECO:0000255 match to sequence model used in manual assertion
ISS GO_REF:0000012 Pairwise alignment (TIGR) ECO:0000031 protein BLAST evidence used in manual assertion
ISS GO_REF:0000018 dictyBase 'Inferred from Electronic Annotation (BLAST method)' ECO:0000031 protein BLAST evidence used in manual assertion
ISS ECO:0000250 sequence similarity used in manual assertion
ISO ECO:0000266 sequence orthology evidence used in manual assertion
ISA ECO:0000247 sequence alignment evidence used in manual assertion
ISM ECO:0000255 match to sequence model used in manual assertion
IGC GO_REF:0000025 Operon structure as IGC evidence ECO:0000084 gene neighbors !!! Need a manual child
IGC ECO:0000317 genomic context used in manual assertion
IBA ECO:0000318 biological aspect of ancestor used in manual assertion
IBD ECO:0000319 biological aspect of descendant used in manual assertion
IKR ECO:0000320 phylogenetic determination of loss of key residues used in manual
IRD ECO:0000321 rapid divergence from ancestral sequence used in manual assertion
RCA ECO:0000245 computational combinatorial analysis used in manual assertion
IMR ECO:0000320 phylogenetic determination of loss of key residues used in manual
assertion