GO-CAM November 22, 2017

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Zoom URL

https://stanford.zoom.us/j/679970729

Agenda

Updates/Discussion on 1.0 Release Milestones

Annotation Attribution in GPAD Output Files

Display user and group labels from minerva metadata

Allow negation in Noctua and SAE and in GPAD export

export-lego-to-gpad-sparql should collate by MOD

Minutes

  • On call: Barbara, Chris, Edith, Harold, Jim, Kevin, Kimberly, Pascale, Paul T., Sabrina, Seth, Suzi

Updates/Discussion on 1.0 Release Milestones

Annotation Attribution in GPAD Output Files

  • AI: Seth/Berkeley will implement a Jenkins job that checks, for all entries in users.yaml that have edit permission in Noctua,
    • there exists an orcid
    • there exists at least one group (that is also present in groups.yaml)
  • AI: Entries in users.yaml file that don't meet these requirements will be output in the Jenkins report and users will be asked to update
  • AI: Berkeley will generate a models report that lists, for each model, :
    • model name
    • all curator names associated with that model
    • default group for each curator
  • AI: Curators will be asked to review this report and if there are models for which their default group is NOT what they want in the providedBy field, then they need to indicate the appropriate group

Please note that the Seth/Berkeley understanding of the above is recorded here:

https://github.com/geneontology/noctua/issues/458#issuecomment-346414479

There are minor differences, such as there will be no "Jenkins" check at this point, but rather just a report. I do not believe that any of these differences will affect the outcomes or understanding.

Display user and group labels from minerva metadata

  • Changed from 1.0 Milestone to wishlist as this impacts the contributor display on the landing page and is not essential for curation or GPAD output

Allow negation in Noctua and SAE and in GPAD export

export-lego-to-gpad-sparql should collate by MOD

  • Will be implemented imminently