GO-CAM Sept 27, 2017

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Zoom URL

https://stanford.zoom.us/j/679970729

Agenda

GPAD Outputs

GPAD missing annotations via 'causally upstream of'?

TEST: causally upstream of - KRC

Attribution

Attribution with GO-CAM exports to GOC annotation files

Simple Annoton Editor

dealing with blank MF in the simple annoton editor

Extend form to include standard GO-CAM model fields

Bare MF annotation should generate part-of triples

Minutes

  • On call: Chris, David H., Edith, Harold, Jim, Karen, Kevin, Kimberly, Pascale, Paul T., Rob, Sabrina, Sage, Seth, Stacia, Terry

GPAD Outputs

  • Salient features:
    • Suppression of MF root annotations
      • What about inferred annotations when there's a root MF annotation?
    • Causal chains
      • causally upstream of or within o causally upstream of or within -> acts upstream of or within
      • part of o causally upstream of or within -> causally upstream of or within - this causal chain was missing
  • ACTION ITEM: on a future GO-CAM call, review the Inference Explanations for some models

Attribution

  • Attribution will be according to the group selected by the curator
  • Groups are available from the drop-down menu to the right of the curator's name
  • Group xref will then be populated in the Assigned_by field of the GPAD output, with curator's orcid in the Annotation Properties field

Simple Annoton Editor

  • Allows curators to add annotons in a table-like interface
  • Annotations are automatically added to the graphical interface with appropriate evidence and relations
    • Note that default relations are used: enabled_by, occurs_in, and part_of
  • Editor enhancements to come:
    • Ability to add basic set of annotation extensions, e.g. has_input for an MF
    • Ability to just add a CC annotation and get the resulting part_of annotation in the graphical interface