GO stats-glossary

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aspect

  • A: all aspects combined: biological_process + molecular_function + cellular_component
  • B: Annotations in the B aspect correspond to direct annotations to GO:0005515 protein binding.
  • P: biological_process
  • F: molecular_function
  • C: cellular_component

bioentity type

In the October 2019 release, the bioentity types used are:

  • protein
  • protein_complex
  • gene_product
  • gene
  • transcript
  • primary_transcript
  • tRNA
  • miRNA
  • antisense_lncRNA
  • snoRNA
  • rRNA
  • RNA
  • ncRNA
  • snRNA
  • scRNA
  • lnc_RNA
  • lincRNA
  • pseudogene
  • RNase_MRP_RNA
  • antisense_RNA
  • RNase_P_RNA
  • telomerase_RNA
  • tmRNA

bioentity type cluster

The bioentity type clusters are:

  • protein
  • protein_complex
  • gene_product
  • gene
  • transcript
  • primary_transcript
  • RNA_cluster: Includes all types of RNAs: RNA, tRNA, miRNA, antisense_lncRNA, snoRNA, rRNA, ncRNA, snRNA, primary_transcript, scRNA, lnc_RNA, lincRNA, pseudogene, RNase_MRP_RNA, antisense_RNA, RNase_P_RNA, telomerase_RNA, tmRNA


evidence_cluster

Evidence grouped as follows:

  • PHYLO: IBA, IKR, IRD and IMR (retired)
  • IEA:IEA
  • OTHER: IC, ISA, ISM, ISO, ISS, NAS, RCA, TAS

  • EXP: EXP, IDA, IEP, IGC, IGI, IMP, IPI

  • ND: ND

  • HTP: HDA, HEP, HGI, HMP, HTP

filtered taxa

Taxa with > 1,000 annotations (including IEAs)

model_organism

Data sets labeled 'by_model_organims' contain data for human and 10 model organisms:

  • NCBITaxon:9606, Homo sapiens
  • NCBITaxon:10116|Rattus norvegicus
  • NCBITaxon:10090|Mus musculus
  • NCBITaxon:3702|Arabidopsis thaliana
  • NCBITaxon:7955|Danio rerio
  • NCBITaxon:6239|Caenorhabditis elegans
  • NCBITaxon:559292|Saccharomyces cerevisiae S288C
  • NCBITaxon:7227|Drosophila melanogaster
  • NCBITaxon:44689|Dictyostelium discoideum
  • NCBITaxon:4896|Schizosaccharomyces pombe
  • NCBITaxon:83333|Escherichia coli K-12

Review Status

Last reviewed: October 24, 2019