ID preferences file
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<?xml version="1.0" encoding="UTF-8"?>
<java version="1.6.0_05" class="java.beans.XMLDecoder"> <object class="java.util.LinkedList"> <void method="add"> <object class="org.obo.datamodel.impl.NamedIDProfile"> <void property="defaultRule"> <string></string> </void> <void property="name"> <string>GO terms</string> </void> <void property="rules"> <void method="add"> <object class="org.obo.datamodel.impl.DefaultIDRule"> <void property="filter"> <void property="booleanOperation"> <int>1</int> </void> <void property="filters"> <void method="add"> <object class="org.obo.filters.ObjectFilterImpl"> <void property="comparison"> <object id="EqualsComparison0" class="org.obo.filters.EqualsComparison"/> </void> <void property="criterion"> <object id="NamespaceSearchCriterion0" class="org.obo.filters.NamespaceSearchCriterion"/> </void> <void property="value"> <string>biological_process</string> </void> </object> </void> <void method="add"> <object class="org.obo.filters.ObjectFilterImpl"> <void property="comparison"> <object idref="EqualsComparison0"/> </void> <void property="criterion"> <object idref="NamespaceSearchCriterion0"/> </void> <void property="value"> <string>molecular_function</string> </void> </object> </void> <void method="add"> <object class="org.obo.filters.ObjectFilterImpl"> <void property="comparison"> <object idref="EqualsComparison0"/> </void> <void property="criterion"> <object idref="NamespaceSearchCriterion0"/> </void> <void property="value"> <string>cellular_component</string> </void> </object> </void> </void> </void> <void property="rule"> <string>GO:$sequence(7,0023004,0023300)$</string> </void> </object> </void> </void> </object> </void> <void method="add"> <object id="NamedIDProfile0" class="org.obo.datamodel.impl.NamedIDProfile"> <void property="defaultRule"> <string></string> </void> <void property="name"> <string>union terms</string> </void> <void property="rules"> <void method="add"> <object class="org.obo.datamodel.impl.DefaultIDRule"> <void property="filter"> <object class="org.obo.filters.ObjectFilterImpl"> <void property="aspect"> <object class="org.obo.filters.AncestorSearchAspect"/> </void> <void property="criterion"> <object class="org.obo.filters.IDSearchCriterion"/> </void> <void property="reasoner"> <object class="org.obo.reasoner.impl.ForwardChainingReasoner"/> </void> <void property="value"> <string>JD:1</string> </void> </object> </void> <void property="rule"> <string>JD:$sequence(7,1,10000)$</string> </void> </object> </void> </void> </object> </void> <void method="add"> <object class="org.obo.datamodel.impl.NamedIDProfile"> <void property="defaultRule"> <string></string> </void> <void property="name"> <string>GO terms</string> </void> <void property="rules"> <void method="add"> <object class="org.obo.datamodel.impl.DefaultIDRule"> <void property="filter"> <void property="booleanOperation"> <int>1</int> </void> <void property="filters"> <void method="add"> <object class="org.obo.filters.ObjectFilterImpl"> <void property="comparison"> <object id="EqualsComparison1" class="org.obo.filters.EqualsComparison"/> </void> <void property="criterion"> <object id="NamespaceSearchCriterion1" class="org.obo.filters.NamespaceSearchCriterion"/> </void> <void property="value"> <string>biological_process</string> </void> </object> </void> <void method="add"> <object class="org.obo.filters.ObjectFilterImpl"> <void property="comparison"> <object idref="EqualsComparison1"/> </void> <void property="criterion"> <object idref="NamespaceSearchCriterion1"/> </void> <void property="value"> <string>molecular_function</string> </void> </object> </void> <void method="add"> <object class="org.obo.filters.ObjectFilterImpl"> <void property="comparison"> <object idref="EqualsComparison1"/> </void> <void property="criterion"> <object idref="NamespaceSearchCriterion1"/> </void> <void property="value"> <string>cellular_component</string> </void> </object> </void> </void> </void> <void property="rule"> <string>GO:$sequence(7,0023004,0023300)$</string> </void> </object> </void> </void> </object> </void> </object> <object idref="NamedIDProfile0"/> </java>