July2007 ontology report

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Ontology Development & GO Editorial Office Report - July 2007

I. Ontology Development

  • SourceForge
    • Items opened: 77
    • Items closed: 72
      • GO Eds: 35
      • MOD curators: 12 (details in Appendix 1)
      • GO Ed/MOD collaborations: 25 (details in Appendix 2)
    • Items still open: 285
      • assigned, GO Eds: 53
      • assigned, MOD curators: 51
      • unassigned: 181



See monthly report in CVS for ontology statistics.


II. GO Editorial Office activities not represented in part I

  • OBO-Edit working group:
    • Additional OBO-Edit 2.0 betas released; demos and testing under way
    • Prioritizing additional features for OBO-Edit 2.0
  • Software hub group (Jane, Amelia):
    • AmiGO working group (Jane, Amelia)
      • Continuing development to prepare for next AmiGO 1.0 release
  • Advocacy group (Jane):
    • Standards for GO tools
    • Slides for general GOC use
    • August newsletter in progress
    • Usual gohelp traffic
  • Annotation outreach (Jen) (note: much more detail in Jen's group report)
    • User categories - descriptions
    • Grant proposal in preparation for immunology (Wellcome Trust)
  • Conferences/meetings
    • Muscle content meeting (Jen, Erika, Midori; see above)
  • Anything else
    • IMG mapping (Jane):
      • IMG functional roles mapping COMPLETE (~2000 terms mapped, ~200 new GO function terms)
      • IMG pathways (500 terms) to commence 6th August
    • metacyc2go update; about 140 new terms (Midori)
    • Search-and-replace script for ontology editing (Jen)
    • GO Bibliography now has 1491 entries
Appendix 1: MOD curators' SF items
1427800 - David, Doug
1745015 - David
1747859 - David
1749719 - David
1751918 - David
1752858 - Doug
1756987 - David
1757574 - David
1757663 - David
1758842 - David
1760941 - Karen C
1761459 - David

Appendix 2: GO Ed-MOD collaboration SF items - MOD curator(s) involved
1233407 - Val, transporter wg
1566704 - Chris T
1621572 - Pascale
1660496 - Karen C, Dianna
1707310 - Michelle, Peter
1719897 - Karen C, Val
1723313 - Alex
1727367 - Val
1739177 - Alex
1741102 - Tom Walk (expert)
1746983 - Val, Harold
1747347 - Doug
1747820 - Susan
1748527 - Doug
1752006 - Alex, Susan
1752079 - Val
1752095 - Val
1752111 - Val
1753438 - Val
1753808 - Karen, Rama
1754690 - Val, Rama
1755770 - Pascale
1756236 - Karen C, Val
819299 - Eurie, Val
973913 - Karen C, Val


(Note: "MOD curator" is shorthand for any non-GO-Ed curator)

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