Jun2008 ontology report

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Ontology Development & GO Editorial Office Report - June 2008

I. Ontology Development

  • SourceForge
    • Items opened: 77
    • Items closed: 92
      • GO Eds: 54
      • MOD curators: 25 (details in Appendix 1)
      • GO Ed/MOD collaborations: 13 (details in Appendix 2)
    • Items still open: 241
      • assigned, GO Eds: 66
      • assigned, MOD curators: 101
      • unassigned: 74
  • Content items resolved
    • Some specific fixes for electron transport terms
    • Several SourceForge items resolved
  • IMG mapping update in progress (Jane)
  • Mailing list created for those ontology developers who use OBO-Edit directly and commit [currently_favored_go].obo to GO CVS

See monthly report in CVS for ontology statistics.

II. GO Editorial Office activities not represented in part I

  • Amelia at Berkeley
  • OBO-Edit working group:
    • Bug testing and documentation for OBO-Edit 2.0 continue
    • Jen doing further work on the GraphViz viewer
    • Exploring possibilities for GO cross-products - OBO-Edit 1 vs. 2
  • Advocacy/outreach
    • Talk on using GO for enrichment analysis for Wellcome Advanced Course 2008, including demo of new AmiGO tools (Jane)
    • Aspergillus annotation workshop planning (Jen, Steve Oliver)
    • AmiGO 1.5.1 patch released
    • AmiGO working group planning for next release continues
    • Continuing work on tool for GO Tools web page (Amelia & Jane)
    • Moodle training (Jen)
  • Publications
    • Erika and Jen have sent in a revision of the muscle content meeting paper, with responses to reviewer's comments
  • Anything else
    • Invited talk at RSC (Midori)
    • GO bibliography has 2028 entries
Appendix 1: MOD curators' SF items
1407482 David, Tanya
1422502 Karen C, Val
1853346 Karen C
1891946 Karen C
1898010 Tanya
1917308 David, Tanya
1945292 David, Tanya
1951610 David, Tanya
1953385 David, Tanya
1953394 Karen C
1954078 David, Tanya
1960654 Tanya
1962447 David, Tanya
1965904 David, Tanya
1974638 David, Tanya
1974648 David, Tanya
1974983 David
1979442 David, Tanya
1981940 David, Tanya
1982457 Donghui
1982660 David, Tanya
1985804 David, Tanya
1993018 David, Tanya
1999361 Karen C
2001811 David, Tanya


Appendix 2: GO Ed-MOD collaboration SF items - MOD curator(s) involved
1219716 Val, Eurie, Jodi
1432785 Nick, Karen C
1508524 Rama
1536003 Rama, Val
1942430 Val
1965563 Karen C
1979776 Jim, Peter
1982098 Val, Eurie, Jodi
1989114 Rama, Val
1994085 Val, Chris
1995835 electron transport wg
1995896 Val, Maria
1996807 Harold, Karen C, Val


(Note: "MOD curator" is shorthand for any non-GO-Ed curator)

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