May2008 ontology report

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Ontology Development & GO Editorial Office Report - March 2008

I. Ontology Development

  • SourceForge
    • Items opened: 83
    • Items closed: 118
      • GO Eds: 53
      • MOD curators: 25 (details in Appendix 1)
      • GO Ed/MOD collaborations: 40 (details in Appendix 2)
    • Items still open: 257
      • assigned, GO Eds: 68
      • assigned, MOD curators: 108
      • unassigned: 81
  • Content items resolved
    • Several SourceForge items resolved
  • Content items in progress
    • Follow-up to 'regulates' work continues, as noted in March.
      • Regulates relationships for multi-organism processes (Jane)
    • Taxon links
      • Techincal work (OBO-Edit, scripts, etc) in progress (Jen, Chris)
      • Determining links relevant to Drosophila (Jen, Susan, Becky)
    • Function-process links for electron transport still being collected
    • Signal transduction overhaul continuing (Jen, David)
    • Additional transport work continuing; new expert participant: Dr Paul Dobson, Manchester Interdisciplinary Biocentre
    • Various SourceForge items
  • IMG mapping update in progress (Jane)

See monthly report in CVS for ontology statistics.

II. GO Editorial Office activities not represented in part I

  • Amelia at Berkeley
  • OBO-Edit working group:
    • Amina has arrived
    • More bug testing and documentation for OBO-Edit 2.0
    • Jen's GUI for obomerge now ready for testing
    • Jen now working on improving GraphViz viewer configurability
  • Advocacy/outreach
    • AmiGO working group planning for AmiGO 1.6
    • May newsletter
    • Tool for GO Tools web page (Amelia & Jane)
  • Publications
    • Erika and Jen have received reviews on the muscle content meeting paper, and are preparing responses and a revised manuscript
  • Meetings
    • ChEBI workshop (Jane)
    • Another round of training at RSC (Jane, Jen)
  • Anything else
    • GO bibliography has 1968 entries
Appendix 1: MOD curators' SF items
1979329 Tanya, David
1958941 Tanya, David
1954197 Tanya, David
1524725 Donghui, Candace
1951771 Tanya, David
1909678 David H, David OS, Susan
1187385 David, Karen P
1970026 Donghui, Tanya
1970004 Donghui
1969977 Donghui
1970020 Donghui
1969792 Donghui
1969962 Donghui
1969980 Donghui
1969212 Donghui
1969219 Donghui
1969197 Donghui
1965314 David, Chris
1945277 David, Tanya
1354493 David, Russ, Doug
1616399 David, Tanya
1664904 Tanya, David
1917311 David
1954489 Tanya, David
1906309 Karen C, Val


Appendix 2: GO Ed-MOD collaboration SF items - MOD curator(s) involved
1644873 Donghui
1568109 Donghui
1969138 Rama, Julie
1940614 Karen C
1610521 David
1683673 Harold, Kimberly, Eurie
1834028 Tanya, Val
1627238 David
1741534 Alex, PAMGO curators
1968766 Val
1671065 Matt B, David
1854029 Ruth, Peter, expert Philippa Talmud
1634430 David, Petra
862210 David
1960729 Chris, Peter
1548649 Alex, Val
1701499 Val, Harold, David, Tanya
1658374 meeting discussion
1650683 Rachael, Karen C, Alex
1587313 Karen C; meeting discussion
1566303 Karen C, Val
1565692 David
1494548 meeting discussion
1494526 Alex, Michelle, Chris, Erika; meeting discussion
903822 Karen C, Tanya
1251273 Alex, Peter
1863428 Peter
1033441 Alex
1892864 Tanya, David
1949239 David, Tanya, Val
1954235 Chris, SGD curators
1886634 Karen C, Harold
1930696 Karen C
1931407 Michelle, Val
1688647 Donghui
1370222 Alex
1744740 Peter
1954259 Peter
1940617 Karen C
1760944 Karen C, Harold

(Note: "MOD curator" is shorthand for any non-GO-Ed curator)

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