OEWG 20100216

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OBO-Edit Working Group, Tuesday February 16th, 2010 8.30 a.m. PDT

Conference call details: New GOC conference call numbers
US: 1 866 953 9688
UK: 0808 238 6001
pin: 801561

Agenda/Chair: Midori
Minutes: KarenC
Attendees: Midori, Jen, KarenC, Harold, Ramona, Terry, Amina.

Action items carried over

Bug and Feature Tracker Updates

Discussion items

bug related to union & disjoint relationship conflict

Terry Meehan of MGI reported a bug related to conflicts in the use of union and disjoint relationships. Bug tracker appears below:

https://sourceforge.net/tracker/?func=detail&atid=418257&aid=2952892&group_id=36855

bug in GraphViz viewer

Amina reported on a bug reported by a user, David Mark of Buffalo, who edits the ENVO, an ontology of environmental conditions in which organisms can live. He reports:

"In particular, when I first used it, if I viewed the ontology as a
graphic, each time I clicked on a 'node' in the tree, the term was
ADDED to the graphic. Now, when I click on a term, I get only that
term and its ancestors, and the previous term disappears."

Amina says that she's aware of a number of bugs in the GraphViz viewer and is actively working on fixing this component.

OBO-Merge issues

There was some discussion about a number of problems in the version of the GO file that Jen created by merging the signalling project with the current ontology file. However, it is known that she used an older version of OBO-Merge (with some known bugs) because the current version of OBO-Merge is unusable, so the bugs she sees in the old version aren't relevant to the bugs in the current version. Amina is working on fixing the bugs in the up-to-date version of OBO-Merge so that it is usable again.

Action Items

Links

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