Oct2008 ontology report

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Ontology Development & GO Editorial Office Report - September 2008

I. Ontology Development

  • SourceForge
    • Items opened: 63
    • Items closed: 55
      • GO Eds: 20
      • MOD curators: 30 (details in Appendix 1)
      • GO Ed/MOD collaborations: 5 (details in Appendix 2)
    • Items still open: 266
      • assigned, GO Eds: 79
      • assigned, MOD curators: 79
      • unassigned: 108
  • Preparation for, and presentations at, GO Consortium and SAB meetings
  • Content items resolved
    • additions (Jane, with PAMGO curators, and Chris for QC xps)
    • Several SourceForge items resolved
  • Content items in progress
    • Continuing work on processes affecting cellular components - briefly presented at GOC meeting (Jane, David, Midori, Val, et al.)
    • Signal transduction overhaul continuing; latest notes at Signaling_Meeting_Minutes_April_2008_-#October_2008; high-level terms proposed and agreed at GOC meeting (Jen, David)
    • File of triggers for annotation QC - testing with GOA presented at GOC, and implementation agreed; see taxon links (Jen, Chris)
    • Function-process links for electron transport, metabolic pathways - presented at GOC (Jen, Harold, et al.; for electron transport see Electron_transport_mf-bp_Sept_2007_onwards.)
    • Quality control reports generated by Chris
      • Regulation (David, Tanya)
      • Multiple part_of parents (several GO curators, especially Tanya & David)
    • Various SourceForge items

See monthly report in CVS for ontology statistics.

II. GO Editorial Office activities not represented in part I

  • Amelia at Berkeley
  • OBO-Edit working group:
    • OBO-Edit 2 testing and documentation
    • Dictionary additions for OBO-Edit2 spell checking (Jen; more details available)
    • Additional work on Tree Viewer (Jen; more details available)
  • Advocacy/outreach
    • Usual gohelp traffic
  • Meetings
    • Reference Genome virtual jamboree, and preparatory meeting among UK-based curators (Jen represented ontology developers
    • GO Consortium and SAB meetings
  • Anything else
    • GO bibliography has 2170 entries
Appendix 1: MOD curators' SF items
1860343 Tanya, David
1860367 Tanya, David
2065221 Donghui
2076051 David
2113023 Donghui
2113026 Donghui
2113030 Donghui
2113037 Donghui
2119116 David
2119766 Donghui
2123653 Donghui
212735  Tanya
2140197 Tanya, David
2140746 Tanya, David
2142740 David, Alex
2144049 Tanya, David
2150097 Donghui
2152211 David
2164482 Tanya, David
2164486 Tanya, David
2166465 Tanya, David
2166645 Tanya, David
2166830 Donghui
2166838 Donghui
2166858 Donghui
2166889 Donghui
2166902 Donghui
2182406 Tanya, David
2186463 Alex
2211994 David


Appendix 2: GO Ed-MOD collaboration SF items - MOD curator(s) involved
2019051	Chris
2078035 Karen C, Val
2092506	Alex
2164199	Julie
2174389	Colin


(Note: "MOD curator" is shorthand for any non-GO-Ed curator)

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