Oct2010 ontology report

Ontology Development Report - Oct 2010

I. Ontology Development

Tracker

• Items opened: 97
• Items closed: 127
• Items still open: 237
  • assigned: 177
  • unassigned: 60

Completed items

• Synchronized over 1500 reactions with MetaCyc, KEGG, RHEA and EC, and converted reaction text to reflect ChEBI names [Amelia]
• Various SourceForge items [all, but largely Midori]

Content items in progress

• Ongoing signaling proposals for top-level signaling terms [Becky and signaling WG]
• Continued submitting missing GOCHE terms to CHEBI, 225 remaining to add [Jane and Harold]
• Editing GOCHE [David, Harold, Jane, Midori, Tanya, Chris]
• Some cleaning-up of post-translational modification terms [Becky]
• Ongoing progress with transcription overhaul, 3 existing terms clarified, 37 new terms [Karen and David]

Publications

• GOCHE paper editing continues [David, Tanya, Jane, Chris, Midori, Harold]
• Heart development paper finished [David and Varsha]

Anything else

• Rebecca Foulger has joined GO Editorial Office team
• Organising signaling ontology workshop for Feb 2011 [Becky]
• Organising GOCHE meeting for Feb 2011 [David, Harold, Midori, Tanya, Chris]

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