Ontology meeting 2013-01-10

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MINUTES: Harold

ATTENDEES:

Wrap-up: ChEBI paper

Where are we?

Also see http://wiki.geneontology.org/index.php/Ontology_meeting_2012-12-20#Renaming_go_xp_chebi and http://wiki.geneontology.org/index.php/Ontology_meeting_2012-12-20#Wrap-up:_ChEBI_paper

Figure still needs work; is not final and needs legend
David to submit pre-submission letter.

Follow-up: TermGenie free form

Jane will comment/report on this strategy: http://wiki.geneontology.org/index.php/Ontology_meeting_2012-12-20#Follow-up:_TermGenie_free_form

Need to restrict permissions : email David or Jane for nomination of people from each group.

Wrap-up: Discuss default relationships for the qualifier column in the new GPAD format

Any updates on http://wiki.geneontology.org/index.php/Ontology_meeting_2012-12-20#Wrap-up:_Discuss_default_relationships_for_the_qualifier_column_in_the_new_GPAD_format ?


Follow-up: Protein/glycoprotein/lipoprotein terms in ChEBI

Anything new since http://wiki.geneontology.org/index.php/Ontology_meeting_2012-12-20#Follow-up:_Protein.2Fglycoprotein.2Flipoprotein_terms_in_ChEBI ? David and Tanya moved many regulation terms that were incorrectly pointing to regulation of translation.

Daily digest emails for new/edited/obsoleted terms (obo-diff.html)

Chris and Heiko to report.

http://build.berkeleybop.org/job/release-go/
Also: QuickGO has a great "history" tab that shows everything that has happened to a term since day 1.

Wrap-up: annotation to 'part' terms (nuclear_part, etc)

Is individual clean-up of annotations complete? No, we need a report of all of the 'part' terms that have annotations. Jenkins check?

Heiko to add a check in Jenkins; Also generate a report of annotations to "_part" terms to help in cleanup.

OBO-OWL workshop

Week of Jan 28 in Berkeley. Who would attend? What is our agenda?

http://wiki.geneontology.org/index.php/Ontology_workshop_Jan_2013

Cell cycle meeting?

Feb 28-March 3 see http://wiki.geneontology.org/index.php/Cell_Cycle

Submission(s) to the first annual JBMS Ontology Issue

See Chris' email Dec. 4th 2012
Pre-submission deadline: Feb 5h
Full Paper submission: March 31

Monthly update: Project Management in JIRA