Ontology meeting 2013-01-10
MINUTES: Harold
ATTENDEES:
Wrap-up: ChEBI paper
Where are we?
Also see http://wiki.geneontology.org/index.php/Ontology_meeting_2012-12-20#Renaming_go_xp_chebi and http://wiki.geneontology.org/index.php/Ontology_meeting_2012-12-20#Wrap-up:_ChEBI_paper
Figure still needs work; is not final and needs legend David to submit pre-submission letter.
Follow-up: TermGenie free form
Jane will comment/report on this strategy: http://wiki.geneontology.org/index.php/Ontology_meeting_2012-12-20#Follow-up:_TermGenie_free_form
Need to restrict permissions : email David or Jane for nomination of people from each group.
Wrap-up: Discuss default relationships for the qualifier column in the new GPAD format
Any updates on http://wiki.geneontology.org/index.php/Ontology_meeting_2012-12-20#Wrap-up:_Discuss_default_relationships_for_the_qualifier_column_in_the_new_GPAD_format ?
Follow-up: Protein/glycoprotein/lipoprotein terms in ChEBI
Anything new since http://wiki.geneontology.org/index.php/Ontology_meeting_2012-12-20#Follow-up:_Protein.2Fglycoprotein.2Flipoprotein_terms_in_ChEBI ? David and Tanya moved many regulation terms that were incorrectly pointing to regulation of translation.
Daily digest emails for new/edited/obsoleted terms (obo-diff.html)
Chris and Heiko to report.
http://build.berkeleybop.org/job/release-go/ Also: QuickGO has a great "history" tab that shows everything that has happened to a term since day 1.
Wrap-up: annotation to 'part' terms (nuclear_part, etc)
Is individual clean-up of annotations complete? No, we need a report of all of the 'part' terms that have annotations. Jenkins check?
Heiko to add a check in Jenkins; Also generate a report of annotations to "_part" terms to help in cleanup.
OBO-OWL workshop
Week of Jan 28 in Berkeley. Who would attend? What is our agenda?
http://wiki.geneontology.org/index.php/Ontology_workshop_Jan_2013
Cell cycle meeting?
Feb 28-March 3 see http://wiki.geneontology.org/index.php/Cell_Cycle
Submission(s) to the first annual JBMS Ontology Issue
See Chris' email Dec. 4th 2012 Pre-submission deadline: Feb 5h Full Paper submission: March 31