Ontology meeting 2018-05-07

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Conference Line

Agenda

GH project link

https://github.com/geneontology/go-ontology/projects/1

Editors Discussion

Outstanding Pull Requests

Minutes

  • On call: Chris, David H., Eric, Harold, Karen, Kimberly, Pascale, Paul T., Tanya

Outstanding Pull Requests

  • Merge early and often or you will have to deal with conflicts
  • If you've requested a review and everything looks okay, the reviewer should be free to go ahead and merge
  • Other conventions:
    • Use WIP to indicate 'Work In Progress'
  • AI: Review your outstanding pull requests and either merge or cancel, if at all possible.

Projects Page

  • Reasoning over roles - should David present the ticket and the issues at the meeting?
    • Should there instead be a breakout session?
    • AI:Move this topic to be a breakout session during the meeting.
  • Reserveosome
    • Harold requested new taxon to be added to imports list
  • regulates o part_of -> regulates property chain
    • There are cases where this property chain results in incorrect inferences.
    • Proposal: take all regulates relationships that are being generated from this chain and instantiate in the ontology
      • Jim will then write a SWRL rule