Ontology meeting 2018-09-24
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Conference Line
Agenda
Editors Discussion
- Question for Chris: Can we use Sequence Ontology in annotation extensions / has input for GO CAM models ? Needed to continue work on transcription, for eg: https://github.com/geneontology/go-ontology/issues/16152
Meetings
Montreal GOC Meeting
- Add name to attendees list if you're going
- http://wiki.geneontology.org/index.php/2018_Montreal_GOC_Meeting_Agenda
Ontology Developers' workshop
The meeting will be in Geneva December (8)9-13
David has started an agenda document in the GOOGLE Drive.
- When to book flights and hotel?
Topics
- Filling in missing GO-Rhea-Reactome xrefs
- moving from reactions to biochemical pathways
- implementation of a method to keep in synch with all three resources
- GO-CAM templates for pathways??
- GH ticket work and mini-project planning
- Dealing with and migrating binding terms
- Dealing with cellular processes (https://github.com/geneontology/go-ontology/issues/12849)
- Taxon constaints- How do we handle them going forward?
- Attendees
- David H (Can make it)
- Kimberly (Can make it)
- Karen (can NOT make it)
- Harold (Can make it)
- Pascale (Can make it)
- Barbara (Maybe make it)
- Alan B (Rhea, can make any day)
- Anne (Rhea, prefers Monday or Tuesday)
- Chris
- Peter D (Can make it)
- Ben?
- Jim?
- Paul T (Can make it)
GH project link
https://github.com/geneontology/go-ontology/projects/1
Minutes
- On call: Barbara, Chris, David, Eric, Jim, Kimberly, Pascale, Paul T., Tanya
Transcription Factor DNA Binding
- The terms that include references to where the TF binds, i.e. distal or proximal, will be obsoleted
- The important part is that the MF represents regulatory region binding; curators could capture more specifics about where the binding occurs with AEs/contextual information
- For now, can use SO terms to capture the region
- AI:Get SO into Noctua
Montreal Meeting
- Reviewed agenda
- Will have reports on major projects
- Need to discuss annotation review
- This is taking a lot of curator time, but is a high priority for the GOC
- Some topics still need a fleshed out proposal, so may be punted until Cambridge, 2018
- For example, what to do with protein binding and protein-containing complex
- Switching to using HGNC identifiers for human genes - community will need sufficient time to prepare for this change
Geneva Ontology Editors Meeting
- Google doc for agenda now available