Ontology meeting 2019-07-08

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Conference Line

See calendar for details

Agenda

Discussion topics

Moving to Protégé 5.5

What happened with the last ontology release?

Two problems:

  • one tab character
  • one consider term was obsolete

EC links follow up

Harold and Pascale: Are we supposed to add dashes to partial ECs? This is not what we have been doing, and links with no dashed don't work. See for example mappings in http://amigo.geneontology.org/amigo/term/GO:0070005 -> Harold was to check with MGI developers whether the partial ECs are still causing problems with mappings every

UniPathway links dead

What are we planning to do ? https://github.com/geneontology/go-site/issues/951 The plan discussed in Geneva, Dec 2018- ontology editors meeting is to move the UniPathway to OLS and link there. What do we need to do next ? (6,910,457 annotations in QuickGO linking to UniPathway) Action item: Pascale to edit the dbxref.yaml file.

Progress on ontobot

David and Jim have regenerated a lot of import files with ontobot, seems to be working great, David will start to assign specific people to different external ontologies.

Other business

On Call