Ontology meeting 2021-06-21
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- Group members: Pascale, Karen, Harold, Raymond, Peter, Jim, Tanya, Kimberly, David, Chris, Paul
- Present:
- Regrets:
Agenda
Announcements
- Rhea-GO alignment jamboree- week of July 26th
Discussion points
ATPase jamboree update
https://github.com/orgs/geneontology/projects/64
Ontology intersection question
https://github.com/geneontology/go-ontology/issues/21634 This is about 'x regions' - cytosolic region, cytoplasmic region, etc. Decision was to add 'DO NOT ANNOTATE' flag on these terms.
Carried over discussion topics from previous meetings
Rhea boomer project update
Secondary metabolism
- Do we need to create the 'metabolism/catabolism/biosynthesis triad?
- See https://github.com/geneontology/go-ontology/issues/21496 & related tickets by Ach
- In many cases we dont have evidence for a specific degradation pathway
- Discussion: agreed that we should not always create the triad, on a case-by-case basis.
- Action: to document