Ontology meeting 2021-08-30

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  • Group members: Pascale, Karen, Harold, Raymond, Peter, Jim, Tanya, Kimberly, David, Chris, Paul
  • Present: Pascale, Tanya, Harold, Raymond, Kimberly, Paul, Chris, Jim
  • Regrets:

Announcement

No calls next 2 weeks - labor day + no GO calls week

Agenda

Aims for GOC meeting - Oct 12-14

Suggestions

  • documentation
  • finish roles??
  • RHEA
    • Boomer tickets; finish fixing ?
    • Anne - obsoleted RHEA terms
    • present some strategy for moving forward
    • metrics: how many mappings do we have, how many are missing (GO-> RHEA // RHEA -> GO : aim to map all RHEA terms with annotations; even if that means mapping to a higher level RHEA mapping
    • additional mappings from RHEA: Metacyc/KEGG ?
  • transcription refactoring update
  • updates in QC and procedures

Report on transcription workshop last week

Colin, Val, Pascale, Ruth, Helen https://docs.google.com/document/d/1dO04FTcWBkWBQaBYJLjmkTTDZvEJTSezXaK9c--RTFU/edit#heading=h.can1sflfx9fi

Make sure unintended inferences don't appear in go-gaf (and maybe go-lego)

https://github.com/geneontology/go-ontology/issues/22051

Ontology editors documentation


Imports PRs

  • Someone please take a quick look at CHEBI and CL PRs

Other Business

https://github.com/geneontology/go-ontology/projects/1


amphiregulin production ticket: https://github.com/geneontology/go-ontology/issues/21878 Ontology editors call:

  • We would like to describe the biological process - maybe the term label is convenient, but it's not a process in the GO sense
  • It's OK to have 'gene expression' of x but we dont think it's a good idea to name these classes