Production and GO Admin

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Project lead: Ben Hitz

Deliverables

Switch to load-qfo-seqs.pl

Involves: Sven, Ben

Retire load-seqs-into-db.pl and replace with the above script

  • TODO: Sven to test script with latest QFO files
  • TODO: populate seq_dbxref
    • currently this populates the new more efficient gene_product_dbxref table (no more gp->gp2s->s2xref joins)
    • we need to switch the script to populate both. new code should use gp_dbxref. old code can use seq_dbxref safely
    • suggested implementation: do this as a separate step after populating gene_product_dbxref
  • TODO: test in production
 Time: 1 week