Projects stand up meeting 2021-02-17

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Attendees

  • Present:
  • Regrets:
  • Managers: David, Huaiyu, Kimberly, Pascale, Seth, Suzi, Judy, Paul, Chris


Announcements

GO meeting May 3-6th: Monday May3rd is a bank holiday in the UK. Do we want to move the meeting to Tues-Fri? OK

Projects presentation

Template:

  • Next deliverables + expected date
  • Progress
  • Issues / blockers

Noctua Imports

GPAD import in GO pipeline

Ongoing imports

MGI
  • all annotations are in Noctua-dev, David found a few bugs. Those are being fixed, then Dustin will do another load.
  • expect the 'loading' part of the imports to be done within a few weeks. Then the exports will need to be checked carefully.
WB

Kimberly

  • Saving P2GO history was a requirement. Juan Carlos is in the process of importing that information

Specifications for File Generation

  • Expected date to finish the imports: 4-6 weeks {approx end of March)

ZFIN

Sabrina/Sierra

  • Sierra created an import, submitted to Dustin
  • Sabrina will start testing the file
  • Sierra is setting up the import pipeline at ZFIN, updating the GAF to only contain the IEAs (Pascale: not clear what will happen to non-IEA data in P2GO such as UniProt EXP and ISS???)
  • Need to do a full switch very soon
  • Note that there are no extensions in ZFIN, so that simplifies the imports
  • Sierra: Some remaining issues, regarding attribution and (??)

SGD

Suzi

  • Same set up as WB - protein2GO + loads of automatic annotations & PAINT
  • At first they wanted to keep the P2GO history but they decided ~ 2 years ago that this was no blocking
  • They would like a dispute system as in P2GO (right now we are using GH)
  • Expected switch date: not sure, they dont have a strong need to move immediately, so it depends on GO resources

Imports discussion

  • Seth: we are reaching the limit of how many groups they can work with in parallel
  • Kimberly GPAD export needs to be checked


  Did not discuss the next items

UniProt

  • No plan yet

VEuPathDB

  • Got in touch this week and would like to start using Noctua

Other resources (Yeast pathways)

History

GPAD export

AOB