RefGenProgress 2008-06-18 (Archived)

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Monthly conference call: June 10th, 2008

Highlights of the June 10th conference call

  • Software group is making progress on integrating the ref genome annotations into AmiGO
  • Paul Thomas has started the Panther analysis on the ref genome gene product sets
  • Now using Kara's PPOD sets as source of curation targets
  • Annotation QC: discussed GRIN1; long discussion about annotating to x protein binding (F) and complex (C) when those two annotations are redundant (here: glutamate receptor binding & glutamate receptor complex). We agreed that, as a general rule, this practice is incorrect; however it is possible that depending on the data available this will happen.
  • Another issue was concerning the difficulty to annotate to a process versus regulation of that process.

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