Reference Genome Data Management and Reporting
Project lead: Sven Heinicke Additional personnel: Mary Dolan
Coordinates with: Reference Genome group.
The Reference Genome group requires detailed reporting and tracking to ensure coordination of annotation and that targets are met. This reporting is also of interest to a wider community. All reports should be derived from the database.
- See also the related AmiGO_Phylotrees project
Loading seq2pthr files. Resolve ID issues.
Also requires loading qfo fasta to get full gp info until we have full gp tables
Status: mostly done, some ID issues remaining (Mary to check)
- summary page for browsing all families
- per-family pages
status: DONE; but more enhancements required, see below
Mary to do
We want to load the full .NHX files from panther to get the intermediate nodes (AN:xxx) branchlens etc in a normalized form
Demonstrate advanced querying in GOOSE