Reference Genome Database Reports
Documentation will be added later; this page is currently a placeholder page for the software group and members of the GOC with SQL experience.
All the reports below are generated from the SQL views documented here:
See the go-refgenomes-views module and the go-evidence-views module
- all IC inferences, with gene products - this is a larger report than the previous because each term pair may be supported by multiple gene products
A refgenome annotation outlier is an annotation in which there are no homologous gene products experimentally-annotated to the same node, ancestor nodes or descendant nodes. The above query is additionally constrained to find non-ISS outliers. Results are sorted by ontology, homolset then organism/source
In this query, an annotation is only treated as an outlier if there are no homologous gene products experimentally annotated to the same node or an ancestor node
- link to AmiGO and refG graphs
- more options for evidence codes
- only check for outliers in other species?
Requesting other reports
Other reports are easy to generate - just submit them to the GO database tracker: