Reference Genome Timeline-June-Dec2010 (Archived)

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Project June 2010 July 2010 August 2010 September 2010 October 2010 November 2010 December 2010
PAINT (Ed, Suzi, Paul) Latest version is Beta29, which we use as a production version. No major bugs. No programmer available to develop PAINT after May 2010.
Panther protein families (Paul) Latest version is V7, with 48 species
MOD curation wnt : Project leaders: Varsha Khodiyar, Suzi Lewis wnt wnt wnt wnt wnt wnt
Protein family annotation p53, MutS/MSH wnt wnt wnt wnt wnt wnt
Curation report (Kara, Sven, Seth, Chris) http://amigo.berkeleybop.org/cgi-bin/amigo/phylotree Public version?
Papers
  • PAINT
  • Phylogenomics: description of the rationale for doing annotations using phylogenetic trees; how we deal with inconsistencies in the tree; dealing with ‘NOTs’; dealing with rapid divergence of sequences
  • Reference Genome ‘end product’: annotations: annotation guidelines; show data from a few families (need to decide on the scope) compare results with other pipelines such automated ISO and automated triangulation; QC.
We'd like at least one paper to be submitted before the grant.