| Project
| June 2010
| July 2010
| August 2010
| September 2010
| October 2010
| November 2010
| December 2010
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| PAINT (Ed, Suzi, Paul)
| Latest version is Beta29, which we use as a production version. No major bugs. No programmer available to develop PAINT after May 2010.
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| Panther protein families (Paul)
| Latest version is V7, with 48 species
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| MOD curation
| wnt : Project leaders: Varsha Khodiyar, Suzi Lewis
| wnt
| wnt
| wnt
| wnt
| wnt
| wnt
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| Protein family annotation
| p53, MutS/MSH
| wnt
| wnt
| wnt
| wnt
| wnt
| wnt
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| Curation report (Kara, Sven, Seth, Chris)
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| http://amigo.berkeleybop.org/cgi-bin/amigo/phylotree
| Public version?
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| Papers
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- PAINT
- Phylogenomics: description of the rationale for doing annotations using phylogenetic trees; how we deal with inconsistencies in the tree; dealing with ‘NOTs’; dealing with rapid divergence of sequences
- Reference Genome ‘end product’: annotations: annotation guidelines; show data from a few families (need to decide on the scope) compare results with other pipelines such automated ISO and automated triangulation; QC.
| We'd like at least one paper to be submitted before the grant.
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