Running orthology tools on the reference genomes gene set

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At the meeting at Princeton, the plan was for each MOD participating in the Ref. Genome project to provide a protein set, in fasta format. Then, as a start, here at Princeton, we'd do an all vs. all BLAST, so that the same BLAST results can be given to the groups developing ortholog identification methods (eg InParanoid, OrthoMCL, etc) with the idea that the results of the methods can then be more easily compared/assessed if the same input sequences and BLAST results were used. It'll probably take 3-4 weeks for the computation to be done on our current system

[ACTION ITEM] (all) Please send a fasta file of amino acid sequences, and an explanation of the header lines

Instructions_for_providing_FASTA_file



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