SWUG:Meeting 2007-06-27

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Meeting notes

Present: Suzi, Chris, Ben, Stan, Amelia (silent, no mic), Seth

Absent: Mary (joining late?), Sohel, Dan

Review of previous action items

  • Documentation : Chris, Seth and Amelia to redirect links

TODO

  • ID Tracking : Chris, Mary to send RQs to Stan

TODO

  • Protein family annotation tool : Suzi to send

TODO

Reports and Discussion

OBO-Edit

  • docking frameworks
  • memory leak issues?
  • cross-product issues

AmiGO

  • map2slim
  • term enrichment
  • sql web client for mirrors

Reference Genomes

  • update from tcon (Mary)
  • prototype progress (Sohel)
  • schema changes for homology
  • AmiGO integration of graphs

Software Architecture, Schema and Modeling

Proposed new schema changes, see: http://gocwiki.geneontology.org/index.php/SWUG:Database

  • ncbi taxon hierarchy
  • multi-species
  • cross-products

Production

  • term load/1.2/graph_path issues

ACTION: Ben to add tests

  • bulk upload
  • taxons

Documentation & Outreach, Papers, Presentations

  • amigo paper
  • NAR preparation

subm: sept

AOB

Review of Action Items

  • Documentation : Chris, Seth and Amelia to redirect links
  • ID Tracking : Chris, Mary to send RQs to Stan
  • Protein family annotation tool : Suzi to send
  • Ben to add tests for graph loading issues