SWUG:Meeting 2007-07-25

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Meeting notes

Present: Absent: sohel

Review of previous action items

  • Documentation : Chris, Seth and Amelia to redirect links

TODO

  • ID Tracking : Chris, Mary to send RQs to Stan

TODO

  • Protein family annotation tool : Suzi to send

TODO: Chris

  • Ben to add tests for graph loading issues

TODO: Ben

Reports and Discussion

OBO-Edit

  • bug fixes
  • optimisations in OEE reasoner, lower memory
  • GE improvements
  • modal progress monitor box
  • isa and partof views

AmiGO

see later

  • GOOSE

Reference Genomes

Software Architecture, Schema and Modeling

SQL and API changes made for:

  • multi-species interactions annotation
  • cross-products in annotations

still need to test

http://gocwiki.geneontology.org/index.php/SWUG:Database

todo:

  • ncbi taxon hierarchy
  • orthology

Production

  • bulkloading
  • Stan: sequences

Code review / presentations

  • AmiGO architecture (Amelia, Seth)

(webex presentation)

Documentation & Outreach, Papers, Presentations

  • August newsletter
  • amigo paper
  • NAR preparation

ACTION: Seth and Amelia will write something for the newsletter

AOB

Sohel is leaving Dictybase & the GO software group, we him all the best!

Review of Action Items

  • Documentation : Chris, Seth and Amelia to redirect links
  • ID Tracking : Chris, Mary to send RQs to Stan
  • Protein family annotation tool : Suzi to send [todo: Chris]
  • Ben to add tests for graph loading issues
  • Seth and Amelia will write something for the newsletter