SWUG:Meeting 2012 04 11

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Action items from previous calls


  • ACTION: chris, tony and jane to have a call to discuss organization
  • ACTION: Mary to add links to example queries and schema (Mary)
  • ACTION: set up a call with: Carlos, Tony, Seth, Mary (monday?) (Seth)
  • ACTION: docs on how we deal with closures in solr (Seth)


  • Overview (Seth)
  • EBI test schema overview (Tony/Carlos)
  • GOlr schema overview (Seth)
The current work is on this schema: [1]
Which is being pieced together with these: [2] with owltools. The command to generate the Solr schema looks like:
owltools --solr-config /home/sjcarbon/local/src/svn/owltools/OWLTools-Solr/src/main/resources/ont-config.yaml /home/sjcarbon/local/src/svn/owltools/OWLTools-Solr/src/main/resources/bio-config.yaml /home/sjcarbon/local/src/svn/owltools/OWLTools-Solr/src/main/resources/ann-config.yaml /home/sjcarbon/local/src/svn/owltools/OWLTools-Solr/src/main/resources/ann_ev_agg-config.yaml --solr-schema-dump
  • Design questions:
    • How much to cache? Graph info?
    • How generic? E.g. use in PO
  • OWLTools loading overview (Seth)
Looks something like:
owltools /srv/tmp/go.owl /srv/tmp/cl.owl /srv/tmp/taxslim.owl --solr-url http://localhost:8080/solr/ --solr-purge --solr-config /home/sjcarbon/local/src/svn/owltools/OWLTools-Solr/src/main/resources/ont-config.yaml --solr-load-ontology --solr-load-gafs /srv/tmp/gene_association.mgi