SWUG Timeline 2010-2011

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Automatically generated from excel file in cvs: timelines/SWUG-timeline-2010-to-2011.txt

Do not edit this table directly

PROJECT LEAD/PERSONNEL Groups 10-Jul 10-Aug 10-Sep 10-Oct 10-Nov 10-Dec 11-Jan 11-Feb 11-Mar 11-Apr 11-May 11-Jun 11-Jul 11-Aug 11-Sep 11-Oct 11-Nov 11-Dec
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Compositional Term Submission Tool Chris Ontology Development v1 beta, curator_testing DONE v1 release, regulation rollout DONE; v1_report DONE integrate_autocomplete (dep: Full Text Indexing rollout additional_templates as required rollout additional_templates as required rollout additional_templates as required rollout additional_templates as required; plan v2 in java/OWL OWL Reasoner_Benchmarks Complete feasibility study - java/OWLAPI port (dep: Transition to OWL) Prototype java/OWLAPI version (TBD: assign developer) Junit test suite beta java/OWLAPI version {TBD: assign developer} production java/OWLAPI version {TBD: assign developer}
OBO-Edit MIREOT support Amina Ontology Development beta with isa closure support DONE release of 2.1, with isa closure support evaluate future requirements
Transition to OWL Chris Ontology Development obof1.4_guide DRAFT release DONE obof1.4_guide DRAFT collect comments obof1.4_syntax spec DRAFT release obof1.4 feature freeze obo abstract syntax to OWL2_mapping, incl IAO obof1.4 formal spec release Java_OBO_Parser spec Java_OBO_Parser impl (TBD: assign developer) JUnit_Test_Suite OBO Parser to OWLAPI_Bridge Integration - add bridge to P4
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Full Text Indexing Seth Evaulate Solr DONE Install Solr on labs DONE GO-Solr Index engine GO-Solr Index engine optimizations Integrate into labs: queries Integrate into labs: autocomplete Public version using Solr for queries Public version with autocomplete Advanced queries via solr (labs)
AmiGO Col16 Display Amelia, Seth Annotation_Advocacy_and_Coordination db storage plan load c16 into db, labs load c16 into db, public display c16, labs query on c16, labs display c16, public
AmiGO Col17 Display Amelia, Seth Annotation_Advocacy_and_Coordination db storage plan load c17 into db, labs load c17 into db, public display c17, labs query on c17, labs display c17, public
Relation Filtering in AmiGO Seth Release database_reasoner DONE Relation Filtering in map2slim Relation Filtering in Term_Enrichment Relation Filtering in main display
AmiGO and QuickGO Integration Seth; Tony QuickGO graph views in AmiGO (labs) Feasibility study of deeper integration TBD
AmiGO Phylotrees Seth Reference Geome basic js Phylo viewer in AmiGO labs DONE Grid view integrated with js phylo view
Reference Genome Data Management and Reporting Sven; Mary, Seth Reference Geome load gp2pthr family info DONE basic html reports in labs gp2family in pulic release load full pthr tree example tree queries in GOOSE
IndiGO Annotation Editor Seth; Tony Annotation_Advocacy_and_Coordination Evaluation of protein2go architecture DONE Feasibility study specification of REST API for ontology info specification of REST API for annotation create/update
GO Galaxy Environment Seth; Amelia alpha on labs DONE map2slim GAF fetching enrichment AmiGO integration (labs) obo2owl visualization AmiGO integration (public)
Taxon Constraint Check Engine Chris, Amelia Annotation_Advocacy_and_Coordination Ontology Development v1 running weekly DONE v1 maintenance v1 maintenance v1 maintenance feasibility: web editing of taxon constraints plan v2 in java/OWL (dep: Transition to OWL) prototype java/OWL version production java/OWL version web interface and editing of constraints
Function to Process Inference Engine Chris Annotation_Advocacy_and_Coordination Ontology Development v1 running weekly DONE v1 maintenance v1 maintenance v1 maintenance plan v2 in java/OWL (dep: Transition to OWL) prototype java/OWL version production java/OWL version
Increasing Expressivity in GO Annotations Amelia Annotation_Advocacy_and_Coordination Ontology Development GAF2 publishing DONE feasibility: integrating pathway/GO data LEGO feasibility
Annotation Rule Engine Amelia Annotation_Advocacy_and_Coordination Ontology Development Collect rules on wiki DONE Specify XML format Collect rules into XML alpha version of rule engine integrate SQL rules into engine integrate scripting rules into engine evaluate OWLAPI, SPARQL, RIF for use in rules engine OWL inferences
Incremental Database Loading Ben Annotation_Advocacy_and_Coordination benchmarks java parsers implemented java bulkload dumpers sql loader
Virtualization Seth+Ben feasibility_study create test VM Distribute VM
Advanced AmiGO Displays Seth N-matrix alpha on labs DONE Ontology-annotation grid view (labs) integration with N-matrix amigo environment
Schema Overhaul Chris plan
AmiGO overhaul Seth
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ONGOING
OBO-Edit 2 Development Amina Ontology Development 2.1 betas DONE 2.1 stable beta testing 2.1 public determine 2.2 requirements evaluate P4 architecture implement simultaneous obo/owl save in P4 autodetect of file changes in OE feasibility study of OE as P4 plugin
AmiGO Development Seth 1_8 labs DONE 1_8 public
PAINT Development Suzi Reference Geome
Production Ben ONGOING ONGOING ONGOING svn support ONGOING ONGOING ONGOING ONGOING ONGOING ONGOING ONGOING ONGOING ONGOING ONGOING ONGOING
Website Maintenance Amelia Category:Web_Presence_Working_Group ONGOING ONGOING ONGOING ONGOING ONGOING ONGOING ONGOING ONGOING ONGOING ONGOING ONGOING ONGOING ONGOING ONGOING ONGOING ONGOING