Sep2008 ontology report

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Ontology Development & GO Editorial Office Report - September 2008

I. Ontology Development

  • SourceForge
    • Items opened: 127
    • Items closed: 127
      • GO Eds: 65
      • MOD curators: 40 (details in Appendix 1)
      • GO Ed/MOD collaborations: 22 (details in Appendix 2)
    • Items still open: 255
      • assigned, GO Eds: 74
      • assigned, MOD curators: 90
      • unassigned: 91
  • Chris Mungall visited the EBI GO editors early in September. We discussed quite a few topics, including:
    • OBO-Edit 2 editing features and release prospects
    • Function-process links
    • Cross-products
    • Regulation term generation
    • PAMGO regulation term
Minutes available at CJM_EBI_Visit_September_2008
  • Content items resolved
    • Several SourceForge items resolved

See monthly report in CVS for ontology statistics.

II. GO Editorial Office activities not represented in part I

  • Amelia at Berkeley
  • OBO-Edit working group:
    • OBO-Edit 2 testing and documentation (including developer documentation from Jen)
    • Dictionary additions for OBO-Edit2 spell checking (Jen)
    • Additional work on Tree Viewer (Jen)
  • Advocacy/outreach
    • Jen participated in science career fair for Ph.D. students and postdocs in London (EMBL stand)
    • Usual gohelp traffic
  • Publications
    • OBO naming conventions manuscript revisions (Jane, with Daniel Schober)
  • Meetings
    • Chris Mungall's visit, as noted in part I
  • Anything else
    • GO bibliography has 2124 entries
Appendix 1: MOD curators' SF items
1187644 David
1571642 David, Michelle
1695781 David, Erika
1695784 David, Mike Bada, ChEBI curators
1708986 Tanya, David
1965487 David, Petra
1986533 Tanya, David
2008308 Tanya, David
2023442 Tanya, David
2041554 Tanya, David
2043272 Tanya, David
2045137 Tanya, David
2045139 Tanya, David
2045148 Tanya, David
2045154 Tanya, David
2045162 Tanya, David
2053370 Tanya, David
2062602 Tanya, David
2062826 Tanya, David
2067034 Tanya, David, Alex
2067127 David
2067442 Tanya, David
2074434 Tanya, David
2080977 Harold
2081298 Donghui
2082549 Tanya, David
2100600 John G
2102537 Tanya, David
2103785 Tanya, David
2107128 Tanya, David
2107237 Tanya, David
2119157 Tanya, David
2124786 David
2128801 Tanya, David
2129960 Tanya, David
2133876 Tanya, David
2134350 Tanya, David
2134403 Tanya, David
2134562 Tanya, David
2134582 Tanya, David

Appendix 2: GO Ed-MOD collaboration SF items - MOD curator(s) involved
1795417 Maria
1980926 Chris, Peter, Eurie
2019054 Debby, David
2019924 Tanya, David, Karen C
2034990 several curators, esp. Ruth
2039153 Chris
2047476 Rama
2082618 David
2088662 Karen C
2089772 Karen C, Julie
2093276 David
2093500 Peter, Michelle
2097061 Peter
2100734 Rama
2101051 Jodi, Karen C
2103409 Val, SGD curators
2104158 Alex
2106442 David
2114070 Jane, Tanya
2118556 Karen C
2119862 David, Ruth
2124312 David

(Note: "MOD curator" is shorthand for any non-GO-Ed curator)

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