Software and Utilities Report 2006

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2006 Progress: Software and Utilities

Media:go-sw-report-2006-cambridge.ppt

Database schema and perl tools

  1. incorporated subsets/slims to schema/loading -
  2. added code for loading GO.xrf_abs
  3. go-db-perl released to CPAN - go-db-perl
  4. several go-perl releases - go-perl
  5. term enrichment added to go-db-perl API - API Call (demo available via AmiGO2)

Applications

  1. AmiGO 1.0 released - see wg report
  2. oboedit - see wg report
  3. AmiGO 2 prototypes

Ontology development

  1. obo-format 1.2 released
  2. GO x OBO Cell logical definitions Definitions docs on GO public wiki
  3. SO Logical Definitions - 156 Genus-differentia definitions
  4. regulation cross-products - see Media:Regulation-xp.ppt