Software meeting 2014-02-26

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GO Meeting Prep

Anything the berkeley team needs to coordinate with others before the meeting?

Ontology Update

A brief update on changes in ontology editing and publishing pipeline, some may affect quickgo or protein2go

GAF/GPAD

  • notification: change to GPAD for inter-species interactions
  • conversion scripts - perl & java (owltools) - make more prominent.

GO Website

Annotation Tools

http://wiki.geneontology.org/index.php/2014_College_Station_GOC_Meeting_Agenda#Sunday_16_March_-_Community_relations_and_Annotation_Production

How do we better share components and manage interaction points

  • protein2go
  • (js)PAINT
  • molecular modeling environment
  • canto
  • gonuts
  • TG
  • textpresso

Molecular Modeling Environment demo (chris):

MM architecture: http://geneontology.org//experimental/lego/docs/lego-architecture.png

Action Items from call

  • [2/26/14 8:10:53 AM] Chris Mungall: todo: check if go-plus contains everything in go (heiko)
  • [2/26/14 8:13:07 AM] Chris Mungall: todo: make a gpad-1.2 (cjm, tony)
  • [2/26/14 8:13:45 AM] Chris Mungall: todo: revisit gpi, namespace should be separate column
  • [2/26/14 8:14:32 AM] Chris Mungall: todo: add examples for complexes in GPI (cjm, tony)
  • [2/26/14 8:15:41 AM] Chris Mungall: todo: add agenda for college station (cjm)
  • [2/26/14 8:17:59 AM] Chris Mungall: todo: get parsers into java/owltools (heiko, cjm)
  • [2/26/14 8:25:10 AM] Chris Mungall: todo: get panther loaded weekly (for TE) (anushya)
  • [2/26/14 8:31:32 AM] Chris Mungall: todo: get documentation on urls from anushya (aunshya)
  • [2/26/14 8:32:01 AM] Chris Mungall: todo: replacement for go xref abbs at college station meeting (cjm to add to agenda)
  • [2/26/14 8:32:52 AM] Chris Mungall: different entity types within an ID space
  • [2/26/14 8:37:33 AM] Chris Mungall: todo: solve the MGI:MGI problem - devise a plan at college station (cjm)
  • [2/26/14 8:39:14 AM] Chris Mungall: todo: follow up with anushya on entry in go xref abbs for PANTHER (anushya, seth)