User contributions for Mi
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4 April 2024
- 11:5911:59, 4 April 2024 diff hist +117 10 April 2024 PAINT Conference Call →Functionome paper revision
- 11:5811:58, 4 April 2024 diff hist +88 10 April 2024 PAINT Conference Call →Agenda
- 11:5711:57, 4 April 2024 diff hist +569 N 10 April 2024 PAINT Conference Call Created page with "==Present== ==Agenda== ==="Do not annotate" terms=== Anushya gathered all the IBDs and the families that will be impacted if these annotations are removed. ===New PAINT release=== This version contains a GUI update so that curators can detect horizontal transfer nodes easily. The fill color of horizontal transfer nodes is now white. Clades where horizontal transfer occurs can also be detected easily using Tree->Color tree->color based on horizontal transfer. ===GO..."
- 11:5211:52, 4 April 2024 diff hist +45 13 March 2024 PAINT Conference Call No edit summary current
- 11:5111:51, 4 April 2024 diff hist +42 PAINT Conference Calls →PAINT Conference Call Agenda and Minutes 2024 current
13 March 2024
- 19:1619:16, 13 March 2024 diff hist +535 13 March 2024 PAINT Conference Call →Agenda
- 18:3918:39, 13 March 2024 diff hist +37 13 March 2024 PAINT Conference Call →GO meeting presentation
- 18:3918:39, 13 March 2024 diff hist +781 13 March 2024 PAINT Conference Call →"Do not annotate" terms
- 12:5312:53, 13 March 2024 diff hist +2 13 March 2024 PAINT Conference Call →Do not annotate terms
- 12:0412:04, 13 March 2024 diff hist +50 13 March 2024 PAINT Conference Call No edit summary
- 11:1211:12, 13 March 2024 diff hist +74 13 March 2024 PAINT Conference Call No edit summary
6 March 2024
- 21:0221:02, 6 March 2024 diff hist +1,313 N 13 March 2024 PAINT Conference Call Created page with "==Present== ==Agenda== ===Taxon Constraint Curation === We are correcting the taxon constraint violations in the current PAINT data using this [https://docs.google.com/spreadsheets/d/1fm2AVtvnhJoa7BUaDpg9Fc-w9cHmyzZrFZsylAUuUhw/edit?usp=sharing Google sheet file]. The PAINT tool implemented a taxon constraint check a few years ago, so it is highly unlikely that TCVs are introduced during the curation. There two likely sources for the TCVs. First, these are really old..."
- 20:3920:39, 6 March 2024 diff hist +42 PAINT Conference Calls →PAINT Conference Call Agenda and Minutes 2024
14 February 2024
- 13:1213:12, 14 February 2024 diff hist +44 14 Feb 2024 PAINT Conference Call →Present current
13 February 2024
- 16:0916:09, 13 February 2024 diff hist +792 14 Feb 2024 PAINT Conference Call →New certificates
- 14:3414:34, 13 February 2024 diff hist +284 14 Feb 2024 PAINT Conference Call →New certificates
- 14:2914:29, 13 February 2024 diff hist +347 N 14 Feb 2024 PAINT Conference Call Created page with "==Present== ==Agenda== ===New certificates=== Installation instructions. ===PAINT paper=== * Latest draft: https://docs.google.com/document/d/1cjIPb4LP8ifmq7k3ryECw5w9YsB8PdB_/edit * Supplemental materials: https://docs.google.com/document/d/1KN4ROPx6ddxsXOaUg5puc4LzgCtuUUYb/edit#heading=h.gjdgxs * Enrichment test site. Category:PAINT"
- 14:2514:25, 13 February 2024 diff hist +46 10 Jan 2024 PAINT Conference Call →Present current
- 14:2514:25, 13 February 2024 diff hist +40 PAINT Conference Calls →PAINT Conference Call Agenda and Minutes 2024
8 January 2024
- 19:0719:07, 8 January 2024 diff hist +154 10 Jan 2024 PAINT Conference Call →Update on automatic replacement of obsoleted GO terms in PAINT annotations
- 19:0219:02, 8 January 2024 diff hist +129 10 Jan 2024 PAINT Conference Call No edit summary
- 19:0019:00, 8 January 2024 diff hist +364 N 10 Jan 2024 PAINT Conference Call Created page with "==Present== ==Agenda== ===PAINT paper=== We are going to focus our discussion on the new draft of human functionome paper. Here is the link to the draft. https://docs.google.com/document/d/1UHaO-ti3WN7r4zcbZnyRyMYUEhJh-d5NqljTktzLQyg/edit?usp=sharing There are some new data. Huaiyu circulated some of them. We can discuss about them. Category:PAINT"
- 17:3717:37, 8 January 2024 diff hist +92 PAINT Conference Calls No edit summary
14 December 2023
- 14:5914:59, 14 December 2023 diff hist 0 13 December 2023 PAINT Conference Call →Other topics, year end wrap up current
13 December 2023
- 13:5513:55, 13 December 2023 diff hist +49 13 December 2023 PAINT Conference Call →Other topics, year end wrap up
- 13:4413:44, 13 December 2023 diff hist +48 13 December 2023 PAINT Conference Call →Present
- 12:2512:25, 13 December 2023 diff hist −1 13 December 2023 PAINT Conference Call →Other topics, year end wrap up
- 12:2412:24, 13 December 2023 diff hist +3 13 December 2023 PAINT Conference Call →Other topics, year end wrap up
- 12:2412:24, 13 December 2023 diff hist +283 13 December 2023 PAINT Conference Call No edit summary
11 December 2023
- 18:4118:41, 11 December 2023 diff hist +84 N 13 December 2023 PAINT Conference Call Created page with "==Present== ==Agenda== Please suggest topics to discuss. Category:PAINT"
- 18:3818:38, 11 December 2023 diff hist +45 PAINT Conference Calls →PAINT Conference Call Agenda and Minutes 2023
17 October 2023
- 17:0417:04, 17 October 2023 diff hist +133 PAINT User Guide →PAINT software
- 16:5816:58, 17 October 2023 diff hist +131 PAINT User Guide →Step 2: Open a family to curate
- 16:5616:56, 17 October 2023 diff hist +59 PAINT User Guide →Step 1: Find and "lock" families for curation
- 16:5416:54, 17 October 2023 diff hist +82 PAINT User Guide →Curating a gene family
- 16:2816:28, 17 October 2023 diff hist +96 PAINT User Guide →Step 2: Open a family to curate
- 16:2716:27, 17 October 2023 diff hist +198 PAINT User Guide →Step 1: Find and "lock" families for curation
- 16:2316:23, 17 October 2023 diff hist +81 PAINT User Guide →Login
- 16:2116:21, 17 October 2023 diff hist +213 PAINT User Guide →Installing and configuring PAINT
20 September 2023
- 15:1915:19, 20 September 2023 diff hist +229 20 September 2023 PAINT Conference Call →Shortening the cycle between new experimental annotations and PAINT current
- 14:4514:45, 20 September 2023 diff hist +361 20 September 2023 PAINT Conference Call →S. japonicus taxon issue
- 14:4214:42, 20 September 2023 diff hist +222 20 September 2023 PAINT Conference Call →PANTHER18.0 release
- 14:4014:40, 20 September 2023 diff hist +15 20 September 2023 PAINT Conference Call →PANTHER17 tree review
- 14:3914:39, 20 September 2023 diff hist +15 20 September 2023 PAINT Conference Call →Shortening the cycle between new experimental annotations and PAINT
- 14:3614:36, 20 September 2023 diff hist +179 20 September 2023 PAINT Conference Call →PANTHER17 tree review
- 12:3012:30, 20 September 2023 diff hist +44 20 September 2023 PAINT Conference Call →Present
15 September 2023
- 12:4112:41, 15 September 2023 diff hist +629 20 September 2023 PAINT Conference Call No edit summary
12 September 2023
- 12:5112:51, 12 September 2023 diff hist +876 N 20 September 2023 PAINT Conference Call Created page with "==Present== ==Agenda== ===PANTHER17 tree review=== Here is the [https://docs.google.com/spreadsheets/d/1fYPOdrtXvhoaCJN0ZA-SeZP4zogH%20CEuD79xWAjV5p4/edit spreadsheet] with missing human IBAs between v.15 and v.17. Missing annotations can be due to multiple reasons. A common one is the replaced GO terms are not used for the obsoleted term. ===Shortening the cycle between new experimental annotations and PAINT=== Currently, once new experimental annotations are rele..."
- 12:4412:44, 12 September 2023 diff hist 0 PAINT Conference Calls No edit summary
31 July 2023
- 12:3212:32, 31 July 2023 diff hist +438 N 13 September 2023 PAINT Conference Call Created page with "==Present== ==Agenda== ===Shortening the cycle between new experimental annotations and PAINT=== Currently, once new experimental annotations are released by GO, it takes up to one month to be visible in PAINT tool. The question is whether the cycle can be shortened. Below are a few ideas. *Snapshot is loaded weekly. *Noctua annotations could be loaded directly. *Literature curation is done directly in PAINT. Category:PAINT" current