Taxon-GO Checks and Commentary - Part 9
Emily Dimmer of GOA has sent this enquiry to Chris:
Could I check with you what version of gene association files you are using in your GO database to query the GO taxon checks that Jen has generated? I'm very confused by one of the results from the most recent run - protein NCBITaxon:9606 20030904 PINC GO:0005816 "spindle pole body" only_in NCBITaxon:4751 "Fungi" :: UniProtKB P23258 TUBG1 GO:0005816 PMID:1904010 TAS C protein NCBITaxon:9606 20030904 PINC This annotation has not been in our gene association file since the GOA 06/10/2009 human gene association file release. It would be ideal if the taxon-checking scripts could be run over the most recent file releases, so that we can see the improvements we're making in our annotation sets, and which annotations we still need to fix.
This was due to some extra files in the experimental location that Chris was using. Chris will see about moving this all to beta stage so that we have the real files instead of an experimental set. He will also work with Tony Sawford at GOA to get the tests set up in-house with GOA. Tony has already started working on this after a meeting with Jennifer Deegan.