Transmembrane transporters

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April 13th 2010

Val has been requesting alot of x transmembrane transport terms for her GOslim mappings. We suspect that lots of the current 'x transport' terms refer to transport across a membrane but the TM parentage is currently missing. To avoid redundancy (and adding in x transmembrane transport terms for each) can any of the following be given the direct parent 'transmembrane transport' ?

The definition of transport ; GO:0006810 is: The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism by means of some external agent such as a transporter or pore.

Note from Pascale: According to the QuickGO change log, this was never the definition for 'transmembrane transport. The first definition was 'The process in which a solute is transported from one side of a membrane to the other.', changed to 'The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other' in 2015. I reverted it back in Oct 2017.

The definition of transmembrane transport ; GO:0055085 is: The process whereby a solute is transported from one side of a membrane to the other. This process includes the actual movement of the solute, and any regulation and preparatory steps, such as reduction of the solute.

This is a list of transport terms that have a transmembrane transporter child, but no x transmembrane transport child:

  • 2-aminoethylphosphonate transport
  • 3-hydroxyphenyl propanoate transport
  • 3-phenylpropionic acid transport
  • acetylcholine transport
  • acidic amino acid transport
  • alanine transport
  • aldarate transport
  • aldonate transport
  • allantoate transport
  • allose transport
  • alpha-glucoside transport
  • alpha-ketoglutarate transport
  • amide transport
  • amine transport
  • anion transport
  • arabinitol transport
  • arabinose transport
  • arbutin transport
  • arginine transport
  • aromatic amino acid transport
  • asparagine transport
  • aspartate transport
  • auxin transport
  • basic amino acid transport
  • beta-alanine transport
    • beta-glucan transport (Val says no)
    • beta-glucoside transport (Val says no)
  • betaine transport
    • bile acid and bile salt tranbilirubin transport (Val says no)
  • bilirubin transport
  • boron transport
  • branched-chain aliphatic amino acid transport
  • C4-dicarboxylate transport
  • cadaverine transport
  • canalicular bile acid transport
  • capsular polysaccharide transport
  • carboxylic acid transport
  • catecholamine transport
  • cation transport
  • cellobiose transport
  • chloride transport
  • choline transport
  • chromaffin granule amine transport
  • citrate transport
  • coenzyme transport
  • cofactor transport
  • cysteine transport
  • D-alanine transport
  • D-amino acid transport
  • D-galactarate transport
  • D-galactonate transport
  • D-glucuronate transport
  • D-methionine transport
  • D-ribose transport
  • D-serine transport
  • D-xylose transport
  • dextrin transport
  • di-, tri-valent inorganic cation transport
  • dicarboxylic acid transport
  • dicarboxylic acid transport
  • dopamine transport
  • drug transport
  • ectoine transport
  • ethanolamine transport
  • fatty acid transport
    • fluid transport (MORE GENERAL... DO NOT MOVE)
  • formate transport
  • fructose transport
  • fucose transport
  • fumarate transport
  • galactitol transport
  • galactose transport
  • galacturonate transport
  • gas transport
  • glucose transport
  • glucose-6-phosphate transport
  • glucoside transport
  • glucosylglycerol transport
  • glucuronate transport
  • glucuronoside transport
  • glutamine transport
  • glycerol transport
  • glycerol-3-phosphate transport
  • glycine transport
  • hexose phosphate transport
  • hexuronate transport
  • hexuronide transport
  • histidine transport
  • homoserine transport
    • hormone transport (Val says no)
  • hydrogen transport
  • hydroxyectoine transport
  • hydroxyproline transport
  • icosanoid transport
  • inorganic anion transport
  • iron chelate transport
  • isoleucine transport
  • isopropylmalate transport
  • L-alanine transport
  • L-amino acid transport
  • L-ascorbic acid transport
  • L-cystine transport
  • L-glutamate transport
  • L-idonate transport
  • L-serine transport
  • lactate transport
  • lactone transport
  • lactose transport
  • leucine transport
    • lipid transport (Val says no)
  • lysine transport
  • maltodextrin transport
  • maltose transport
  • mannitol transport
  • mannose transport
  • mannosylglycerate transport
  • melibiose transport
  • metal ion transport
  • methionine transport
  • methylammonium transport
  • methylgalactoside transport
  • mevalonate transport
  • monoamine transport
  • monocarboxylic acid transport
  • monosaccharide transport
  • monovalent inorganic cation transport
    • multidrug transport (already directly under TM transport)
  • myo-inositol transport
  • N-acetylgalactosamine transport
  • N-acetylglucosamine transport
    • neurotransmitter transport (have some non-TM transport, eg in vesicles: DO NOT MOVE)
  • neutral amino acid transport
  • nitric oxide transport
  • norepinephrine transport
  • nucleobase, nucleoside, nucleotide and nucleic acid transport
  • nucleotide transport
  • nucleotide-sugar transport
  • oligogalacturonide transport
  • oligopeptide transport
  • oligosaccharide transport
  • organic acid transport
  • organic alcohol transport
  • organic anion transport
  • organic cation transport
  • ornithine transport
  • oxalate transport
  • oxaloacetate transport
  • pentose transport
  • peptide transport
  • phenylalanine transport
  • phospholipid transport
  • phosphonate transport
  • polyamine transport
  • polyol transport
  • polysaccharide transport
  • positive regulation of transport
  • proline transport
  • propanediol transport
  • propionate transport
  • prostaglandin transport
    • protein transport (Val says no)
  • proton transport
  • putrescine transport
  • pyridoxal phosphate transport
  • pyridoxal transport
  • pyridoxamine transport
  • pyridoxine transport
  • pyrimidine nucleotide-sugar transport
  • pyruvate transport
  • quaternary ammonium group transport
  • raffinose transport
  • rhamnose transport
  • S-adenosylmethionine transport
  • S-methylmethionine transport
  • salicin transport
  • serine transport
    • serotonin transport (Val says no)
  • shikimate transport
  • sialic acid transport
  • siderophore transport
  • siderophore-iron transport
  • sorbitol transport
  • spermidine transport
  • spermine transport
    • sterol transport (Val says no)
  • succinate transport
  • sucrose transport
  • sulfur amino acid transport
    • synaptic vesicle amine transport (Val says no)
    • synaptic vesicle transport (Val says no)
  • tartrate transport
  • taurine transport
  • teichoic acid transport
  • thiamin transport
  • threonine transport
    • thyroid hormone transport (Val says no)
  • transition metal ion transport
  • trehalose transport
  • tricarboxylic acid transport
  • tryptophan transport
  • tyrosine transport
    • urea transport (Val says no)
  • uronic acid transport
  • valine transport
    • water transport (more general.... DO NOT MOVE)

This is a list of x transmembrane transport terms. Can any of them be merged with their 'x transport' parent, and the 'x transport' parent be moved direclty under transmembrane transport?

  • acetyl-CoA transmembrane transport
  • amino acid transmembrane transport
  • boron transmembrane transport
  • carbohydrate transmembrane transport
  • hexose transmembrane transport
  • gluconate transmembrane transport
  • triose phosphate transmembrane transport
  • carbon dioxide transmembrane transport
  • coenzyme A transmembrane transport
  • dipeptide transmembrane transport
  • FAD transmembrane transport
  • glutathione transmembrane transport
  • heme transmembrane transport
  • ion transmembrane transport
  • acetate transmembrane transport
  • cadmium ion transmembrane transport
  • calcium ion transmembrane transport
  • copper ion transmembrane transport
  • iron ion transmembrane transport
  • malate transmembrane transport
  • manganese ion transmembrane transport
  • nickel ion transmembrane transport
  • phosphate transmembrane transport
  • succinate transmembrane transport
  • zinc ion transmembrane transport
  • NAD transmembrane transport
  • nicotinamide mononucleotide transmembrane transport
  • purine nucleoside transmembrane transport
  • sterol transmembrane transport
  • tripeptide transmembrane transport