Tree annotation progress
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This is a list of questions that arose while PAINTing PTHR_____. =Questions for MOD curators= ==Molecular Function== ===Organism(s) 1=== *'''Question: '''Insert question here. **'''Curator answer: '''Insert answer here. ===Organism(s) 2=== ==Cellular Component== ==Biological Process== =Questions for ontology curators= ==Molecular Function== ==Cellular Component== ==Biological Process==
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Table to claim families
Tree continues at Backup table for Tree Annotation Progress
| PANTHER family | Description | Assigned to | Deposited in CVS (Year-Month-Day) | Fast pass? | Time to curate phylogeny | Time to curate MF | Time to curate CC | Time to curate BP |
|---|---|---|---|---|---|---|---|---|
| PTHR10000 | PHOSPHOSERINE PHOSPHATASE | Mike | 2010-9-22 | Y | 6 min | 6 min | 6 min | 9 min |
| PTHR10003 | CU/ZN SUPEROXIDE DISMUTASE | Mike | 2010-9-28 | Y | 5 min | 47 min | 14 min | 18 min |
| PTHR10073 | DNA MISMATCH REPAIR PROTEIN (MLH, PMS, MUTL) | Mike | 2010-9-29 | Y | 8 min | 11 min | 27 min | 40 min |
| PTHR10150 | DNA REPAIR ENDONUCLEASE XP-F / MEI-9 / RAD1 | Mike | 2010-9-24 | Y | 1 min | 15 min | 3 min | 20 min |
| PTHR10202 | PRESENILIN | Mike | 2010-6-30 | N | ||||
| PTHR11361 | DNA MISMATCH REPAIR MUTS RELATED PROTEINS | Mike | 2010-7-22 | N | ||||
| PTHR11447 | CELLULAR TUMOR ANTIGEN P53-RELATED | Mike | 2010-7-8 | N | ||||
| PTHR11829 | FORKHEAD PROTEIN/ FORKHEAD PROTEIN DOMAIN | Mike | 2010-6-4 | N | ||||
| PTHR21304 | UNCHARACTERIZED | Pascale | 2010-7-1 | N | ||||
| PTHR22573 | PHOSPHOHEXOMUTASE FAMILY MEMBER | Mike | 2010-4-27 | N | ||||
| PTHR10004 | Mike | Family contains no RefGenome proteins and no annotations. | ||||||
| PTHR10005 | SNO AND SKI ONCOGENE FAMILY | Pascale | 2011-01-21 | Y | 1 min | 30 min | 10 min | 60 min |
| PTHR10006 | MUCIN | Rama | 2011-03-22 | |||||
| PTHR10009 | YELLOW PROTEIN-RELATED | Li | 2011-01-05 | Y | 1 hr | 10 min | 30 min | 1 hr |
| PTHR10010 | SODIUM-DEPENDENT PHOSPHATE TRANSPORTER-RELATED | Dmitry | ||||||
| PTHR10027 | CALCIUM-ACTIVATED POTASSIUM CHANNEL ALPHA CHAIN | Donghui | 2011-01-28 | N | ||||
| PTHR10037 | VOLTAGE-GATED CATION CHANNEL (CALCIUM AND SODIUM) | Varsha | ||||||
| PTHR10063 | TUBERIN | Mike | 2011-1-6 | Y | 7 min | 6 min | 29 min | 48 min |
| PTHR10074 | MAJOR FACILITATOR SUPERFAMILY MEMBER | Pascale | ||||||
| PTHR10125 | P2X PURINOCEPTOR | Rama | 2011-03-22 | |||||
| PTHR10130 | PEROXISOMAL TARGETING RECEPTOR PEX5 | Li | 2011-01-07 | Y | 1 hr | 1 hr | 1 hr | 1 hr |
| PTHR10138 | TRYPTOPHAN 2,3-DIOXYGENASE | Dmitry | ||||||
| PTHR10146 | PROLINE SYNTHETASE ASSOCIATED PROTEIN | Donghui | 2011-02-22 | N | ||||
| PTHR10159 | DUAL SPECIFICITY PROTEIN PHOSPHATASE | Mike | 2011-1-21 | N | ||||
| PTHR10169 | DNA TOPOISOMERASE/GYRASE | Mike | 2011-1-3 | Y | 10 min | 44 min | 38 min | 32 min |
| PTHR10170 | HUNTINGTIN | Pascale | 2011-1-21 | Y | 5 min | 10 min | 20 min | 20 min |
| PTHR10188 | PROTEASE T2 ASPARAGINASE | Rama | 2011-03-22 | |||||
| PTHR10194 | RAS GTPASE-ACTIVATING PROTEINS | Li | 2011-01-14 | Y | 1.5 hr | 40 min | 60 min | 30 min |
| PTHR10196 | XYLULOSE KINASE | Dmitry | ||||||
| PTHR10199 | THROMBOSPONDIN | Donghui | ||||||
| PTHR10210 | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE | Varsha | ||||||
| PTHR10218 | GTP-BINDING PROTEIN ALPHA SUBUNIT | Mike | 2011-2-11 | Y | 13 min | 55 min | 45 min | 200 min |
| PTHR10224 | Pascale | 2011-1-21 | Y | 5 min | 20 min- incorrect MGI annotation | 10 min | ||
| PTHR10233 | TRANSLATION INITIATION FACTOR EIF-2B | Rama | 2011-03-22 | |||||
| PTHR10250 | MEMBRANE-ASSOCIATED PROTEINS IN EICOSANOID AND GLUTATHIONE METABOLISM (MAPEG) FAMILY MEMBER | Li | 2011-01-18 | Y | 3 hr | 1.5 hr | 1 hr | 30 min |
| PTHR10270 | SOX TRANSCRIPTION FACTORS | Dmitry | ||||||
| PTHR10290 | DNA TOPOISOMERASE TYPE I | Donghui | 2011-02-22 | Y | 15 min | 30 min | 40 min | 10 min |
| PTHR10314 | SER/THR DEHYDRATASE, TRP SYNTHASE | Varsha | ||||||
| PTHR10322 | DNA POLYMERASE B FAMILY MEMBER | Mike | 2011-1-4 | Y | 14 min | 15 min | 24 min | 70 min |
| PTHR10366 | NAD DEPENDENT EPIMERASE/DEHYDRATASE | Pascale | ||||||
| PTHR10371 | NADH-UBIQUINONE OXIDOREDUCTASE 24 KDA SUBUNIT | Rama | 2011-03-22 | |||||
| PTHR10394 | 40S RIBOSOMAL PROTEIN S8 | Li | 2011-01-18 | Y | 10 min | 10 min | 10 min | 10 min |
| PTHR10420 | UBIQUITIN SPECIFIC PROTEASE FAMILY C19-RELATED | Dmitry | ||||||
| PTHR10432 | RNA-BINDING PROTEIN | Donghui | family does not exist 2011-01-26 | |||||
| PTHR10436 | RIBOSOMAL PSEUDOURIDINE SYNTHASE | Varsha | ||||||
| PTHR10442 | 40S RIBOSOMAL PROTEIN S21E | Mike | 2011-1-5 | Y | 2 min | 3 min | 3 min | 5 min |
| PTHR10457 | MEVALONATE KINASE/GALACTOKINASE | Pascale | ||||||
| PTHR10459 | ATP-DEPENDENT DNA LIGASE FAMILY | Rama | 2011-03-22 | |||||
| PTHR10496 | 40S RIBOSOMAL PROTEIN S24 | Li | 2011-01-10 | Y | 1 hr | 5 min | 1 hr | 30 min |
| PTHR10499 | COLLAGEN ALPHA CHAIN | Dmitry | ||||||
| PTHR10502 | ANNEXIN | Donghui | N | 45 | 30 | 40 | 20 | |
| PTHR10505 | CALCITONIN RELATED | Varsha | ||||||
| PTHR10516 | FK506 BINDING PROTEIN | Mike | 2011-2-11 | Y | 18 min | 32 min | 71 min | 75 min |
| PTHR10534 | PYRIDOXINE KINASE | Pascale | ||||||
| PTHR10559 | TRANSCOBALAMIN | Rama | 2011-03-22 | |||||
| PTHR10569 | GLYCOGEN DEBRANCHING ENZYME | Li | 2011-01-20 | Y | 20 min | 20 min | 10 min | 10 min |
| PTHR10571 | GLUCOSAMINEPHOSPHOTRANSFERASE | Dmitry | ||||||
| PTHR10574 | LAMININ | Donghui | family does not exist 2011-01-27 | |||||
| PTHR10593 | SERINE/THREONINE-PROTEIN KINASE RIO | Varsha | ||||||
| PTHR10596 | CADHERIN | Mike | Family does not exist | |||||
| PTHR10638 | COPPER/TOPAQUINONE OXIDASE | Pascale | ||||||
| PTHR10663 | ARF GUANYL-NUCLEOTIDE EXCHANGE FACTOR | Rama | 2011-03-22 | |||||
| PTHR10668 | PHYTOENE DEHYDROGENASE | Li | 2011-01-20 | Y | 40 min | 20 min | 60 min | 20 min |
| PTHR10681 | PEROXIREDOXIN | Dmitry | ||||||
| PTHR10732 | 40S RIBOSOMAL PROTEIN S17 | Donghui | 2011-01-28 | Y | 5 | 2 | 15 | 6 |
| PTHR10744 | 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER | Varsha | ||||||
| PTHR10769 | RIBOSOMAL PROTEIN S28 | Mike | 2011-1-5 | Y | 1 min | 1 min | 4 min | 3 min |
| PTHR10794 | YHET-RELATED ALPHA/BETA HYDROLASE DOMAIN CONTAINING | Pascale | ||||||
| PTHR10795 | SUBTILISIN/KEXIN-RELATED SERINE PROTEASE | Rama | 2011-03-22 | |||||
| PTHR10799 | ATP-DEPENDENT HELICASE SMARCA (SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN A)-RELATED | Li | ||||||
| PTHR10809 | VESICLE-ASSOCIATED MEMBRANE PROTEIN (VAMP) | Dmitry | ||||||
| PTHR10844 | CAVEOLIN | Donghui | ||||||
| PTHR10849 | NADH-UBIQUINONE OXIDOREDUCTASE 1, CHAIN 1 | Varsha | ||||||
| PTHR10856 | CORONIN | Mike | 2011-2-15 | Y | 7 min | 5 min | 74 min | 73 min |
| PTHR10859 | GLYCOSYLTRANSFERASE RELATED | Pascale | ||||||
| PTHR10871 | 30S/40S RIBOSOMAL PROTEIN | Rama | 2011-03-22 | |||||
| PTHR10882 | DIPHTHINE SYNTHASE | Li | ||||||
| PTHR10884 | NADH-UBIQUINONE OXIDOREDUCTASE-RELATED | Dmitry | ||||||
| PTHR10887 | DNA2/NAM7 HELICASE FAMILY | Donghui | ||||||
| PTHR10889 | DEOXYRIBOSE-PHOSPHATE ALDOLASE | Varsha | ||||||
| PTHR10890 | CYSTEINYL-TRNA SYNTHETASE | Mike | 2011-1-5 | Y | 4 min | 7 min | 18 min | 3 min |
| PTHR10906 | SECY/SEC61-ALPHA FAMILY MEMBER | Pascale | ||||||
| PTHR10927 | SHWACHMAN-BODIAN-DIAMOND SYNDROME PROTEIN | Rama | 2011-03-22 | |||||
| PTHR10949 | LIPOIC ACID SYNTHETASE | Li | ||||||
| PTHR10953 | UBIQUITIN-ACTIVATING ENZYME E1 | Dmitry | ||||||
| PTHR10969 | MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED | Donghui | ||||||
| PTHR10977 | DIPHOSPHOMEVALONATE DECARBOXYLASE | Varsha | ||||||
| PTHR10981 | CLN3/BATTENIN | Mike | 2011-2-18 | Y | 3 min | 7 min | 33 min | 79 min |
| PTHR10992 | ALPHA/BETA HYDROLASE RELATED | Pascale | ||||||
| PTHR11019 | THIJ/PFPI | Rama | 2011-03-22 | |||||
| PTHR11027 | APOLIPOPROTEIN A-II | Li | ||||||
| PTHR11042 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE (EIF2-ALPHA KINASE)-RELATED | Dmitry | ||||||
| PTHR11048 | PRENYLTRANSFERASES | Donghui | ||||||
| PTHR11081 | XP-G/RAD2 DNA REPAIR ENDONUCLEASE FAMILY | Varsha | ||||||
| PTHR11089 | GTP-BINDING PROTEIN-RELATED | Mike | 2011-2-18 | Y | 33 min | 41 min | 36 min | 8 min |
| PTHR11118 | UNCHARACTERIZED | Pascale | 2011-1-21 | Y | 2 min | 15 min | 1 min | 1 min (no data) |
| PTHR11164 | GLUTAMATE CYSTEINE LIGASE | Rama | 2011-03-22 | |||||
| PTHR11178 | IRON-SULFUR CLUSTER SCAFFOLD PROTEIN NFU-RELATED | Li | ||||||
| PTHR11200 | INOSITOL 5-PHOSPHATASE | Dmitry | ||||||
| PTHR11205 | RIBOSOMAL PROTEIN S7 | Donghui | ||||||
| PTHR11215 | METAL DEPENDENT HYDROLASE - RELATED | Varsha | ||||||
| PTHR11227 | WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES (WIPI)-RELATED | Mike | 2011-2-23 | Y | 13 min | 37 min | 35 min | 36 min |
| PTHR11247 | PALMITOYL-PROTEIN THIOESTERASE/DOLICHYLDIPHOSPHATASE 1 | Pascale | ||||||
| PTHR11254 | HECT DOMAIN UBIQUITIN-PROTEIN LIGASE | Rama | 2011-03-22 | |||||
| PTHR11256 | BCL-2 RELATED | Li | ||||||
| PTHR11260 | GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING | Dmitry | ||||||
| PTHR11267 | T-BOX PROTEIN-RELATED | Donghui | ||||||
| PTHR11274 | RAD25/XP-B DNA REPAIR HELICASE | Varsha | ||||||
| PTHR11278 | 40S RIBOSOMAL PROTEIN S7 | Mike | 2011-1-5 | Y | 1 min | 1 min | 17 min | 13 min |
| PTHR11289 | BREAST CANCER TYPE 2 SUSCEPTIBILITY PROTEIN BRCA2 | Pascale | 2011-1-21 | Y | 15 min | 30 min | 20 min | 30 min |
| PTHR11295 | CDC2, MAP KINASE-RELATED | Rama | 2011-03-22 | |||||
| PTHR11336 | PHEROMONE AND ODORANT RECEPTOR | Li | ||||||
| PTHR11339 | EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED | Dmitry | ||||||
| PTHR11353 | CHAPERONIN | Donghui | ||||||
| PTHR11385 | SERUM ALBUMIN-RELATED | Varsha | ||||||
| PTHR11389 | ZINC FINGER PROTEIN | Mike | Clade-by-clade, not standard MF-CC-BP | 7 min | ||||
| PTHR11404 | SUPEROXIDE DISMUTASE 2 | Pascale | ||||||
| PTHR11409 | ADENOSINE DEAMINASE | Rama | 2011-03-22 | |||||
| PTHR11410 | ATP SYNTHASE SUBUNIT 6 | Li | ||||||
| PTHR11437 | RIBONUCLEASE | Dmitry | ||||||
| PTHR11444 | ASPARTATEAMMONIA/ARGININOSUCCINATE/ADENYLOSUCCINATE LYASE | Donghui | ||||||
| PTHR11451 | TRNA SYNTHETASE-RELATED | Varsha | ||||||
| PTHR11452 | ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE | Mike | 2011-1-4 | Y | 5 min | 17 min | 18 min | 22 min |
| PTHR11458 | PORPHOBILINOGEN SYNTHASE | Pascale | ||||||
| PTHR11461 | SERINE PROTEASE INHIBITOR, SERPIN | Rama | 2011-03-22 | |||||
| PTHR11462 | JUN TRANSCRIPTION FACTOR-RELATED | Li | ||||||
| PTHR11465 | CATALASE | Dmitry | ||||||
| PTHR11468 | GLYCOGEN PHOSPHORYLASE | Donghui | ||||||
| PTHR11472 | DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER | Varsha | ||||||
| PTHR11489 | RIBOSOMAL PROTEIN S2 | Mike | 2011-1-5 | Y | 1 min | 5 min | 27 min | 17 min |
| PTHR11496 | ALCOHOL DEHYDROGENASE | Pascale | ||||||
| PTHR11502 | 40S RIBOSOMAL PROTEIN S6 | Rama | 2011-03-22 | |||||
| PTHR11514 | MYC | Li | ||||||
| PTHR11521 | TROPONIN T | Dmitry | ||||||
| PTHR11540 | MALATE AND LACTATE DEHYDROGENASE | Donghui | ||||||
| PTHR11544 | COLD SHOCK DOMAIN CONTAINING PROTEINS | Varsha | ||||||
| PTHR11559 | CARBOXYLESTERASE | Mike | 2011-3-11 | Y | 31 min | 52 min | 36 min | 38 min |
| PTHR11564 | GTPASE CONTAINING FAMILY OF SIGNAL RECOGNITION PARTICLE PROTEINS | Pascale | ||||||
| PTHR11568 | HEPATOCYTE NUCLEAR FACTOR 1 | Rama | 2011-03-22 | |||||
| PTHR11573 | RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN | Li | ||||||
| PTHR11581 | 30S/40S RIBOSOMAL PROTEIN S4 | Dmitry | ||||||
| PTHR11592 | GLUTATHIONE PEROXIDASE | Donghui | ||||||
| PTHR11594 | 40S RIBOSOMAL PROTEIN S27 | Varsha | ||||||
| PTHR11600 | SUGAR TRANSPORTER | Mike | Family does not exist | |||||
| PTHR11606 | GLUTAMATE DEHYDROGENASE | Pascale | ||||||
| PTHR11615 | NITRATE, FROMATE, IRON DEHYDROGENASE | Rama | 2011-03-22 | |||||
| PTHR11627 | FRUCTOSE-BISPHOSPHATE ALDOLASE | Li | ||||||
| PTHR11629 | VACUOLAR PROTON ATPASES | Dmitry | ||||||
| PTHR11632 | SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT | Donghui | ||||||
| PTHR11636 | POU DOMAIN | Varsha | ||||||
| PTHR11639 | S100 CALCIUM-BINDING PROTEIN A | zzz-unassigned | ||||||
| PTHR11647 | AMINOHYDROLASE | zzz-unassigned | ||||||
| PTHR11652 | 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER | zzz-unassigned | ||||||
| PTHR11654 | OLIGOPEPTIDE TRANSPORTER-RELATED | zzz-unassigned | ||||||
| PTHR11662 | SODIUM-DEPENDENT PHOSPHATE TRANSPORTERS | zzz-unassigned | ||||||
| PTHR11670 | ACONITASE | zzz-unassigned | ||||||
| PTHR11679 | VESICLE PROTEIN SORTING-ASSOCIATED | zzz-unassigned | ||||||
| PTHR11680 | SERINE HYDROXYMETHYLTRANSFERASE | zzz-unassigned | ||||||
| PTHR11685 | ARIADNE RING ZINC FINGER | zzz-unassigned | ||||||
| PTHR11693 | ATP SYNTHASE GAMMA CHAIN | zzz-unassigned | ||||||
| PTHR11695 | ALCOHOL DEHYDROGENASE RELATED | zzz-unassigned | ||||||
| PTHR11699 | ALDEHYDE DEHYDROGENASE-RELATED | zzz-unassigned | ||||||
| PTHR11700 | 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER | zzz-unassigned | ||||||
| PTHR11710 | 40S RIBOSOMAL PROTEIN S19 | zzz-unassigned | ||||||
| PTHR11715 | GLYCINE CLEAVAGE SYSTEM H PROTEIN | zzz-unassigned | ||||||
| PTHR11758 | 30S RIBOSOMAL PROTEIN S8 | zzz-unassigned | ||||||
| PTHR11759 | 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 | zzz-unassigned | ||||||
| PTHR11760 | 30S/40S RIBOSOMAL PROTEIN S3 | zzz-unassigned | ||||||
| PTHR11772 | ASPARAGINE SYNTHETASE | zzz-unassigned | ||||||
| PTHR11773 | GLYCINE DEHYDROGENASE | zzz-unassigned | ||||||
| PTHR11780 | NADH-UBIQUINONE OXIDOREDUCTASE FLAVOPROTEIN 1 (NDUFV1) | zzz-unassigned | ||||||
| PTHR11785 | AMINO ACID TRANSPORTER | zzz-unassigned | ||||||
| PTHR11793 | BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR | zzz-unassigned | ||||||
| PTHR11821 | DNAJ/HSP40 | zzz-unassigned | ||||||
| PTHR11824 | VOLTAGE-DEPENDENT CALCIUM CHANNEL BETA SUBUNIT | zzz-unassigned |
