Tree annotation progress

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Question template

Here is a template for organizing pages of questions. Please paste it into the page for the family.

This is a list of questions that arose while PAINTing PTHR_____.

=Questions for MOD curators=

==Molecular Function==
===Organism(s) 1===
*'''Question: '''Insert question here.
**'''Curator answer: '''Insert answer here.

===Organism(s) 2===
==Cellular Component==
==Biological Process==
=Questions for ontology curators=
==Molecular Function==
==Cellular Component==
==Biological Process==

When necessary, please indicate when a question is

 Critical
<font color ="red"> '''Critical'''</font>

or

 Important (not critical)
<font color ="green"> '''Important (not critical)'''</font>

Table to claim families

Tree continues at Backup table for Tree Annotation Progress

PANTHER family Description Assigned to Deposited in CVS (Year-Month-Day) Fast pass? Time to curate phylogeny Time to curate MF Time to curate CC Time to curate BP
PTHR10000 PHOSPHOSERINE PHOSPHATASE Mike 2010-9-22 Y 6 min 6 min 6 min 9 min
PTHR10003 CU/ZN SUPEROXIDE DISMUTASE Mike 2010-9-28 Y 5 min 47 min 14 min 18 min
PTHR10073 DNA MISMATCH REPAIR PROTEIN (MLH, PMS, MUTL) Mike 2010-9-29 Y 8 min 11 min 27 min 40 min
PTHR10150 DNA REPAIR ENDONUCLEASE XP-F / MEI-9 / RAD1 Mike 2010-9-24 Y 1 min 15 min 3 min 20 min
PTHR10202 PRESENILIN Mike 2010-6-30 N
PTHR11361 DNA MISMATCH REPAIR MUTS RELATED PROTEINS Mike 2010-7-22 N
PTHR11447 CELLULAR TUMOR ANTIGEN P53-RELATED Mike 2010-7-8 N
PTHR11829 FORKHEAD PROTEIN/ FORKHEAD PROTEIN DOMAIN Mike 2010-6-4 N
PTHR21304 UNCHARACTERIZED Pascale 2010-7-1 N
PTHR22573 PHOSPHOHEXOMUTASE FAMILY MEMBER Mike 2010-4-27 N
PTHR10004 Mike Family contains no RefGenome proteins and no annotations.
PTHR10005 SNO AND SKI ONCOGENE FAMILY Pascale 2011-01-21 Y 1 min 30 min 10 min 60 min
PTHR10006 MUCIN Rama 2011-03-22
PTHR10009 YELLOW PROTEIN-RELATED Li 2011-01-05 Y 1 hr 10 min 30 min 1 hr
PTHR10010 SODIUM-DEPENDENT PHOSPHATE TRANSPORTER-RELATED Dmitry
PTHR10027 CALCIUM-ACTIVATED POTASSIUM CHANNEL ALPHA CHAIN Donghui 2011-01-28 N
PTHR10037 VOLTAGE-GATED CATION CHANNEL (CALCIUM AND SODIUM) Varsha
PTHR10063 TUBERIN Mike 2011-1-6 Y 7 min 6 min 29 min 48 min
PTHR10074 MAJOR FACILITATOR SUPERFAMILY MEMBER Pascale
PTHR10125 P2X PURINOCEPTOR Rama 2011-03-22
PTHR10130 PEROXISOMAL TARGETING RECEPTOR PEX5 Li 2011-01-07 Y 1 hr 1 hr 1 hr 1 hr
PTHR10138 TRYPTOPHAN 2,3-DIOXYGENASE Dmitry
PTHR10146 PROLINE SYNTHETASE ASSOCIATED PROTEIN Donghui 2011-02-22 N
PTHR10159 DUAL SPECIFICITY PROTEIN PHOSPHATASE Mike 2011-1-21 N
PTHR10169 DNA TOPOISOMERASE/GYRASE Mike 2011-1-3 Y 10 min 44 min 38 min 32 min
PTHR10170 HUNTINGTIN Pascale 2011-1-21 Y 5 min 10 min 20 min 20 min
PTHR10188 PROTEASE T2 ASPARAGINASE Rama 2011-03-22
PTHR10194 RAS GTPASE-ACTIVATING PROTEINS Li 2011-01-14 Y 1.5 hr 40 min 60 min 30 min
PTHR10196 XYLULOSE KINASE Dmitry
PTHR10199 THROMBOSPONDIN Donghui
PTHR10210 RIBOSE-PHOSPHATE PYROPHOSPHOKINASE Varsha
PTHR10218 GTP-BINDING PROTEIN ALPHA SUBUNIT Mike 2011-2-11 Y 13 min 55 min 45 min 200 min
PTHR10224 Pascale 2011-1-21 Y 5 min 20 min- incorrect MGI annotation 10 min
PTHR10233 TRANSLATION INITIATION FACTOR EIF-2B Rama 2011-03-22
PTHR10250 MEMBRANE-ASSOCIATED PROTEINS IN EICOSANOID AND GLUTATHIONE METABOLISM (MAPEG) FAMILY MEMBER Li 2011-01-18 Y 3 hr 1.5 hr 1 hr 30 min
PTHR10270 SOX TRANSCRIPTION FACTORS Dmitry
PTHR10290 DNA TOPOISOMERASE TYPE I Donghui 2011-02-22 Y 15 min 30 min 40 min 10 min
PTHR10314 SER/THR DEHYDRATASE, TRP SYNTHASE Varsha
PTHR10322 DNA POLYMERASE B FAMILY MEMBER Mike 2011-1-4 Y 14 min 15 min 24 min 70 min
PTHR10366 NAD DEPENDENT EPIMERASE/DEHYDRATASE Pascale
PTHR10371 NADH-UBIQUINONE OXIDOREDUCTASE 24 KDA SUBUNIT Rama 2011-03-22
PTHR10394 40S RIBOSOMAL PROTEIN S8 Li 2011-01-18 Y 10 min 10 min 10 min 10 min
PTHR10420 UBIQUITIN SPECIFIC PROTEASE FAMILY C19-RELATED Dmitry
PTHR10432 RNA-BINDING PROTEIN Donghui family does not exist 2011-01-26
PTHR10436 RIBOSOMAL PSEUDOURIDINE SYNTHASE Varsha
PTHR10442 40S RIBOSOMAL PROTEIN S21E Mike 2011-1-5 Y 2 min 3 min 3 min 5 min
PTHR10457 MEVALONATE KINASE/GALACTOKINASE Pascale
PTHR10459 ATP-DEPENDENT DNA LIGASE FAMILY Rama 2011-03-22
PTHR10496 40S RIBOSOMAL PROTEIN S24 Li 2011-01-10 Y 1 hr 5 min 1 hr 30 min
PTHR10499 COLLAGEN ALPHA CHAIN Dmitry
PTHR10502 ANNEXIN Donghui N 45 30 40 20
PTHR10505 CALCITONIN RELATED Varsha
PTHR10516 FK506 BINDING PROTEIN Mike 2011-2-11 Y 18 min 32 min 71 min 75 min
PTHR10534 PYRIDOXINE KINASE Pascale
PTHR10559 TRANSCOBALAMIN Rama 2011-03-22
PTHR10569 GLYCOGEN DEBRANCHING ENZYME Li 2011-01-20 Y 20 min 20 min 10 min 10 min
PTHR10571 GLUCOSAMINEPHOSPHOTRANSFERASE Dmitry
PTHR10574 LAMININ Donghui family does not exist 2011-01-27
PTHR10593 SERINE/THREONINE-PROTEIN KINASE RIO Varsha
PTHR10596 CADHERIN Mike Family does not exist
PTHR10638 COPPER/TOPAQUINONE OXIDASE Pascale
PTHR10663 ARF GUANYL-NUCLEOTIDE EXCHANGE FACTOR Rama 2011-03-22
PTHR10668 PHYTOENE DEHYDROGENASE Li 2011-01-20 Y 40 min 20 min 60 min 20 min
PTHR10681 PEROXIREDOXIN Dmitry
PTHR10732 40S RIBOSOMAL PROTEIN S17 Donghui 2011-01-28 Y 5 2 15 6
PTHR10744 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER Varsha
PTHR10769 RIBOSOMAL PROTEIN S28 Mike 2011-1-5 Y 1 min 1 min 4 min 3 min
PTHR10794 YHET-RELATED ALPHA/BETA HYDROLASE DOMAIN CONTAINING Pascale
PTHR10795 SUBTILISIN/KEXIN-RELATED SERINE PROTEASE Rama 2011-03-22
PTHR10799 ATP-DEPENDENT HELICASE SMARCA (SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN A)-RELATED Li
PTHR10809 VESICLE-ASSOCIATED MEMBRANE PROTEIN (VAMP) Dmitry
PTHR10844 CAVEOLIN Donghui
PTHR10849 NADH-UBIQUINONE OXIDOREDUCTASE 1, CHAIN 1 Varsha
PTHR10856 CORONIN Mike 2011-2-15 Y 7 min 5 min 74 min 73 min
PTHR10859 GLYCOSYLTRANSFERASE RELATED Pascale
PTHR10871 30S/40S RIBOSOMAL PROTEIN Rama 2011-03-22
PTHR10882 DIPHTHINE SYNTHASE Li
PTHR10884 NADH-UBIQUINONE OXIDOREDUCTASE-RELATED Dmitry
PTHR10887 DNA2/NAM7 HELICASE FAMILY Donghui
PTHR10889 DEOXYRIBOSE-PHOSPHATE ALDOLASE Varsha
PTHR10890 CYSTEINYL-TRNA SYNTHETASE Mike 2011-1-5 Y 4 min 7 min 18 min 3 min
PTHR10906 SECY/SEC61-ALPHA FAMILY MEMBER Pascale
PTHR10927 SHWACHMAN-BODIAN-DIAMOND SYNDROME PROTEIN Rama 2011-03-22
PTHR10949 LIPOIC ACID SYNTHETASE Li
PTHR10953 UBIQUITIN-ACTIVATING ENZYME E1 Dmitry
PTHR10969 MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED Donghui
PTHR10977 DIPHOSPHOMEVALONATE DECARBOXYLASE Varsha
PTHR10981 CLN3/BATTENIN Mike 2011-2-18 Y 3 min 7 min 33 min 79 min
PTHR10992 ALPHA/BETA HYDROLASE RELATED Pascale
PTHR11019 THIJ/PFPI Rama 2011-03-22
PTHR11027 APOLIPOPROTEIN A-II Li
PTHR11042 EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE (EIF2-ALPHA KINASE)-RELATED Dmitry
PTHR11048 PRENYLTRANSFERASES Donghui
PTHR11081 XP-G/RAD2 DNA REPAIR ENDONUCLEASE FAMILY Varsha
PTHR11089 GTP-BINDING PROTEIN-RELATED Mike 2011-2-18 Y 33 min 41 min 36 min 8 min
PTHR11118 UNCHARACTERIZED Pascale 2011-1-21 Y 2 min 15 min 1 min 1 min (no data)
PTHR11164 GLUTAMATE CYSTEINE LIGASE Rama 2011-03-22
PTHR11178 IRON-SULFUR CLUSTER SCAFFOLD PROTEIN NFU-RELATED Li
PTHR11200 INOSITOL 5-PHOSPHATASE Dmitry
PTHR11205 RIBOSOMAL PROTEIN S7 Donghui
PTHR11215 METAL DEPENDENT HYDROLASE - RELATED Varsha
PTHR11227 WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES (WIPI)-RELATED Mike 2011-2-23 Y 13 min 37 min 35 min 36 min
PTHR11247 PALMITOYL-PROTEIN THIOESTERASE/DOLICHYLDIPHOSPHATASE 1 Pascale
PTHR11254 HECT DOMAIN UBIQUITIN-PROTEIN LIGASE Rama 2011-03-22
PTHR11256 BCL-2 RELATED Li
PTHR11260 GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING Dmitry
PTHR11267 T-BOX PROTEIN-RELATED Donghui
PTHR11274 RAD25/XP-B DNA REPAIR HELICASE Varsha
PTHR11278 40S RIBOSOMAL PROTEIN S7 Mike 2011-1-5 Y 1 min 1 min 17 min 13 min
PTHR11289 BREAST CANCER TYPE 2 SUSCEPTIBILITY PROTEIN BRCA2 Pascale 2011-1-21 Y 15 min 30 min 20 min 30 min
PTHR11295 CDC2, MAP KINASE-RELATED Rama 2011-03-22
PTHR11336 PHEROMONE AND ODORANT RECEPTOR Li
PTHR11339 EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED Dmitry
PTHR11353 CHAPERONIN Donghui
PTHR11385 SERUM ALBUMIN-RELATED Varsha
PTHR11389 ZINC FINGER PROTEIN Mike Clade-by-clade, not standard MF-CC-BP 7 min
PTHR11404 SUPEROXIDE DISMUTASE 2 Pascale
PTHR11409 ADENOSINE DEAMINASE Rama 2011-03-22
PTHR11410 ATP SYNTHASE SUBUNIT 6 Li
PTHR11437 RIBONUCLEASE Dmitry
PTHR11444 ASPARTATEAMMONIA/ARGININOSUCCINATE/ADENYLOSUCCINATE LYASE Donghui
PTHR11451 TRNA SYNTHETASE-RELATED Varsha
PTHR11452 ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE Mike 2011-1-4 Y 5 min 17 min 18 min 22 min
PTHR11458 PORPHOBILINOGEN SYNTHASE Pascale
PTHR11461 SERINE PROTEASE INHIBITOR, SERPIN Rama 2011-03-22
PTHR11462 JUN TRANSCRIPTION FACTOR-RELATED Li
PTHR11465 CATALASE Dmitry
PTHR11468 GLYCOGEN PHOSPHORYLASE Donghui
PTHR11472 DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER Varsha
PTHR11489 RIBOSOMAL PROTEIN S2 Mike 2011-1-5 Y 1 min 5 min 27 min 17 min
PTHR11496 ALCOHOL DEHYDROGENASE Pascale
PTHR11502 40S RIBOSOMAL PROTEIN S6 Rama 2011-03-22
PTHR11514 MYC Li
PTHR11521 TROPONIN T Dmitry
PTHR11540 MALATE AND LACTATE DEHYDROGENASE Donghui
PTHR11544 COLD SHOCK DOMAIN CONTAINING PROTEINS Varsha
PTHR11559 CARBOXYLESTERASE Mike 2011-3-11 Y 31 min 52 min 36 min 38 min
PTHR11564 GTPASE CONTAINING FAMILY OF SIGNAL RECOGNITION PARTICLE PROTEINS Pascale
PTHR11568 HEPATOCYTE NUCLEAR FACTOR 1 Rama 2011-03-22
PTHR11573 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN Li
PTHR11581 30S/40S RIBOSOMAL PROTEIN S4 Dmitry
PTHR11592 GLUTATHIONE PEROXIDASE Donghui
PTHR11594 40S RIBOSOMAL PROTEIN S27 Varsha
PTHR11600 SUGAR TRANSPORTER Mike Family does not exist
PTHR11606 GLUTAMATE DEHYDROGENASE Pascale
PTHR11615 NITRATE, FROMATE, IRON DEHYDROGENASE Rama 2011-03-22
PTHR11627 FRUCTOSE-BISPHOSPHATE ALDOLASE Li
PTHR11629 VACUOLAR PROTON ATPASES Dmitry
PTHR11632 SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT Donghui
PTHR11636 POU DOMAIN Varsha
PTHR11639 S100 CALCIUM-BINDING PROTEIN A zzz-unassigned
PTHR11647 AMINOHYDROLASE zzz-unassigned
PTHR11652 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER zzz-unassigned
PTHR11654 OLIGOPEPTIDE TRANSPORTER-RELATED zzz-unassigned
PTHR11662 SODIUM-DEPENDENT PHOSPHATE TRANSPORTERS zzz-unassigned
PTHR11670 ACONITASE zzz-unassigned
PTHR11679 VESICLE PROTEIN SORTING-ASSOCIATED zzz-unassigned
PTHR11680 SERINE HYDROXYMETHYLTRANSFERASE zzz-unassigned
PTHR11685 ARIADNE RING ZINC FINGER zzz-unassigned
PTHR11693 ATP SYNTHASE GAMMA CHAIN zzz-unassigned
PTHR11695 ALCOHOL DEHYDROGENASE RELATED zzz-unassigned
PTHR11699 ALDEHYDE DEHYDROGENASE-RELATED zzz-unassigned
PTHR11700 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER zzz-unassigned
PTHR11710 40S RIBOSOMAL PROTEIN S19 zzz-unassigned
PTHR11715 GLYCINE CLEAVAGE SYSTEM H PROTEIN zzz-unassigned
PTHR11758 30S RIBOSOMAL PROTEIN S8 zzz-unassigned
PTHR11759 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 zzz-unassigned
PTHR11760 30S/40S RIBOSOMAL PROTEIN S3 zzz-unassigned
PTHR11772 ASPARAGINE SYNTHETASE zzz-unassigned
PTHR11773 GLYCINE DEHYDROGENASE zzz-unassigned
PTHR11780 NADH-UBIQUINONE OXIDOREDUCTASE FLAVOPROTEIN 1 (NDUFV1) zzz-unassigned
PTHR11785 AMINO ACID TRANSPORTER zzz-unassigned
PTHR11793 BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR zzz-unassigned
PTHR11821 DNAJ/HSP40 zzz-unassigned
PTHR11824 VOLTAGE-DEPENDENT CALCIUM CHANNEL BETA SUBUNIT zzz-unassigned