UniProt-GOA datasources
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UniProt-GOA maintains annotations from several sources. Not all these sources are in the goa.yaml file, only those for which GOA produces a separate GAF/GPAD file.
This is the full list of data sources is here [1].
GOA internal sources
Those are fully integrated into Protein2GO and in the GOA database, and are edited via Protein2GO
- AgBase
- Alzheimers_University_of_Toronto
- BHF-UCL
- ARUK-UCL
- HGNC-UCL
- ParkinsonsUK-UCL
- CACAO
- CAFA
- CBI Computational Genomics Group (CCG)
- DFLAT
- dictyBase
- FlyBase
- Human Genome Database (GDB)
- GO_Central
- Gramene (GR)
- HGNC
- J. Craig Venter Institute (JCVI)
- LIFEdb
- Microbial ENergy processes Gene Ontology Project (MENGO)
- MTBBASE
- NTNU_SB
- PAMGO_MGG
- PINC
- Roslin_Institute
- Structure-Function Linkage Database (SFLD)
- SGD
- SYSCILIA_CCNET
- SynGO
- SynGO-UCL
- TIGR
- UniProt
- WormBase (WB)
- YuBioLab
Automated pipelines
- EC2GO GO_REF:0000002
- Ensembl Compara GO_REF:0000107
- EnsemblFungi GO_REF:0000107
- EnsemblMetazoa GO_REF:0000107
- EnsemblPlants GO_REF:0000107
- EnsemblProtists GO_REF:0000107
- GOC GOC Gene Ontology Consortium GO_REF:0000108
- InterPro2GO GO_REF:0000002
- RNAcentral GO_REF:0000115
- UniPathway2GO GO_REF:0000041
- UniProt Keywords2GO GO_REF:0000004
- UniProt Subcellular Location2GO GO_REF:0000023
- UniRule2GO GO_REF:0000104
GOCentral/ Noctua Internal sources
- GO_Central (IBA) -> separately loaded by the GO pipeline - GOREF:0000033
- MGI
- XenBase
- ZFIN
Review Status
Last reviewed: November 30, 2023