UniProt-GOA datasources

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UniProt-GOA maintains annotations from several sources. Not all these sources are in the goa.yaml file, only those for which GOA produces a separate GAF/GPAD file.

This is the full list of data sources is here [1].

GOA internal sources

Those are fully integrated into Protein2GO and in the GOA database, and are edited via Protein2GO

  • AgBase
  • Alzheimers_University_of_Toronto
  • BHF-UCL
    • ARUK-UCL
    • HGNC-UCL
    • ParkinsonsUK-UCL
  • CACAO
  • CAFA
  • CBI Computational Genomics Group (CCG)
  • DFLAT
  • dictyBase
  • FlyBase
  • Human Genome Database (GDB)
  • GO_Central
  • Gramene (GR)
  • HGNC
  • J. Craig Venter Institute (JCVI)
  • LIFEdb
  • Microbial ENergy processes Gene Ontology Project (MENGO)
  • MTBBASE
  • NTNU_SB
  • PAMGO_MGG
  • PINC
  • Roslin_Institute
  • Structure-Function Linkage Database (SFLD)
  • SGD
  • SYSCILIA_CCNET
  • SynGO
  • SynGO-UCL
  • TIGR
  • UniProt
  • WormBase (WB)
  • YuBioLab


Automated pipelines

  • EC2GO GO_REF:0000002
  • Ensembl Compara GO_REF:0000107
  • EnsemblFungi GO_REF:0000107
  • EnsemblMetazoa GO_REF:0000107
  • EnsemblPlants GO_REF:0000107
  • EnsemblProtists GO_REF:0000107
  • GOC GOC Gene Ontology Consortium GO_REF:0000108
  • InterPro2GO GO_REF:0000002
  • RNAcentral GO_REF:0000115
  • UniPathway2GO GO_REF:0000041
  • UniProt Keywords2GO GO_REF:0000004
  • UniProt Subcellular Location2GO GO_REF:0000023
  • UniRule2GO GO_REF:0000104

GOCentral/ Noctua Internal sources

  • GO_Central (IBA) -> separately loaded by the GO pipeline - GOREF:0000033
  • MGI
  • XenBase
  • ZFIN

Review Status

Last reviewed: November 30, 2023