XP:biological process xp cell
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[edit] Synopsis
Logical definitions for GO Biological Processes using OBO-Cell. These were sourced from auto-generated results, but then vetted manually. They may still be incomplete. The relations used may also change. osteoblast differentiation = cell differentiation THAT results_in_acquisition_of_features_of osteoblast
[edit] Introduction
XPs defining biological processes in terms of cells; example:
[Term] id: GO:0009994 ! oocyte differentiation intersection_of: GO:0030154 ! cell differentiation intersection_of: OBO_REL:results_in_acquisition_of_features_of CL:0000023 ! oocyte
i.e. oocyte differentiation = cell differentiation THAT results_in_acquisition_of_features_of oocyte
See the go/scratch/xps directory
- xp obo file
- imports file - point oboedit at this
This xp file has been registered in the OBO xps metadata so it is available here:
Missing Link Report:
Other reports:
- In the GO Tracker, set the Group to be "Cell-XP"
- In the Cell Ontology tracker, set the Group to be GO-Cell-XP
These will be examined after the NIAID cell ontology meeting (many involve immunology)
[edit] Relations used
Many relations of the results_in_X form are used. These may seem partially redundant with the BP hierarchy, but they make reasoning easier.
Examples:
- results_in_complete_development_of
- results_in_acquisition_of_features_of
All in ro_proposed
[edit] History
See XP:Meetings
The first pass of bp_xp_cell used a relatively minimal set of relations based on has_participant. However, this set did not prove to be enough to provide necessary and sufficient conditions. We are now using a wider set from ro_proposed
