XP:cellular component xp cell

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logical definitions for GO terms that are members of the the CC x CL cross-product set

GO-internal XPs for CC are divided into 3 xp sets:

Example:

  • Male germ cell nucleus =def nucleus that part_of male germ cell

Methods

Obol was used to generate the initial version of the file. This was then vetted by cjm. Obol grammar: obol_cellular_component_cell prolog grammar

ontologies used

  • GO (CC) - terms defined
  • CL - for differentia
  • RO
  • ro_proposed

availability

Issues

When do we use FAO and when do we use CL?

See:

http://www.geneontology.org/scratch/xps/cellular_component_xp_fungal_anatomy.obo

Results

Relations

All we use so far is the part_of relation

Examples

[Term]
id: GO:0030446 ! hyphal cell wall
intersection_of: GO:0005618 ! cell wal
intersection_of: part_of CL:0000286 ! hyphal cell
[Term]
id: GO:0016528 ! sarcoplasm 
intersection_of: GO:0005737 ! cytoplasm 
intersection_of: part_of CL:0000187 ! muscle cell
[Term]
id: GO:0042582 ! azurophil granule
intersection_of: GO:0005766 ! primary lysosome
intersection_of: part_of CL:0000775 ! neutrophil

[Term]
id: GO:0014704 ! intercalated disc 
intersection_of: GO:0005911 ! intercellular junction
intersection_of: part_of CL:0000746 ! cardiac muscle cell

Missing Links Discovered

See also

XP:biological_process_xp_cell