XP:cellular component xp go

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logical definitions of CC cross-product classes, in terms of BP and MF.

GO-internal XPs for CC are divided into two resources

These are quite different in nature; this xp file deals will what a cellular component does. The CC*CC xps deal with how components are interrelated spatially

Methods

Obol was used to generate the initial version of the file. This was then vetted by cjm.

Obol grammar: obol_cellular_component_xp prolog grammar

ontologies used

  • GO (CC) - terms defined
  • GO (BP+MF) - for differentia
  • RO
  • ro_proposed

availability

See the scratch/xps directory

The main XP file is:

You can load this in conjunction with GO.

Or you can just point oboedit at the imports file:

The XPs are also available from the OBO ontologies download matrix.

NEW: in obo browser:

Results

Relations

capable_of is used for MF and BP

Examples

[Term]
id: GO:0000118 ! histone deacetylase complex
intersection_of: GO:0043234 ! protein complex
intersection_of: capable_of GO:0004407 ! histone deacetylase activity
[Term]
id: GO:0000109 ! nucleotide-excision repair complex
intersection_of: GO:0043234 ! protein complex
intersection_of: capable_of GO:0006289 ! nucleotide-excision repair

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