XP:cellular component xp go
From GO Public
logical definitions of CC cross-product classes, in terms of BP and MF.
GO-internal XPs for CC are divided into two resources
- XP:cellular_component_xp_go - this one - CC x {BP,MF}
- XP:cellular_component_xp_self - CC x CC
These are quite different in nature; this xp file deals will what a cellular component does. The CC*CC xps deal with how components are interrelated spatially
Contents |
[edit] Methods
Obol was used to generate the initial version of the file. This was then vetted by cjm.
Obol grammar: obol_cellular_component_xp prolog grammar
[edit] ontologies used
- GO (CC) - terms defined
- GO (BP+MF) - for differentia
- RO
- ro_proposed
[edit] availability
See the scratch/xps directory
The main XP file is:
You can load this in conjunction with GO.
Or you can just point oboedit at the imports file:
The XPs are also available from the OBO ontologies download matrix.
[edit] Results
[edit] Relations
has_function is used for MF and realized_as is used for BP. We may just use a single relation in a future version.
[edit] Examples
[Term] id: GO:0045323 ! interleukin-1 receptor complex intersection_of: GO:0032991 ! macromolecular complex intersection_of: OBO_REL:has_function GO:0004908 ! interleukin-1 receptor activity
[Term] id: GO:0000109 ! nucleotide-excision repair complex intersection_of: GO:0032991 ! macromolecular complex intersection_of: OBO_REL:realizes GO:0006289 ! nucleotide-excision repair
[edit] Missing Links Discovered
- tracker item - 4 is_a links
- abduced links
